PDB ID:  pdb_00002eim
  • Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • Deposition date: 2007-03-13
Number of assemblies:  1
Assembly ID:  0  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 26
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (CUStructure of CUCU ), AB (TGLStructure of TGLTGL ), AC (CDLStructure of CDLCDL ), BA (MGStructure of MGMG ), BB (DMUStructure of DMUDMU ), BC (CHDStructure of CHDCHD ), CA (NAStructure of NANA ), CB (CUStructure of CUCU ), CC (CHDStructure of CHDCHD ), DA (ZNStructure of ZNZN ), DB (MGStructure of MGMG ), DC (DMUStructure of DMUDMU ), EB (NAStructure of NANA ), FB (ZNStructure of ZNZN ), GA (PGVStructure of PGVPGV ), HA (CHDStructure of CHDCHD ), IA (CUAStructure of CUACUA ), IB (CHDStructure of CHDCHD ), JA (TGLStructure of TGLTGL ), JB (TGLStructure of TGLTGL ), KA (PSCStructure of PSCPSC ), KB (TGLStructure of TGLTGL ), LA (CHDStructure of CHDCHD ), LB (PGVStructure of PGVPGV ), MA (DMUStructure of DMUDMU ), MB (CUAStructure of CUACUA ), NA (ZNStructure of ZNZN ), NB (TGLStructure of TGLTGL ), OA (PEKStructure of PEKPEK ), OB (PSCStructure of PSCPSC ), PA (PEKStructure of PEKPEK ), PB (DMUStructure of DMUDMU ), QA (PGVStructure of PGVPGV ), QB (ZNStructure of ZNZN ), RA (PGVStructure of PGVPGV ), RB (CHDStructure of CHDCHD ), SA (PGVStructure of PGVPGV ), SB (PEKStructure of PEKPEK ), TA (CDLStructure of CDLCDL ), TB (PEKStructure of PEKPEK ), UA (CHDStructure of CHDCHD ), UB (PGVStructure of PGVPGV ), VA (TGLStructure of TGLTGL ), VB (PGVStructure of PGVPGV ), WA (ZNStructure of ZNZN ), WB (PGVStructure of PGVPGV ), XA (CDLStructure of CDLCDL ), XB (CDLStructure of CDLCDL ), YA (PEKStructure of PEKPEK ), YB (ZNStructure of ZNZN ), ZA (CHDStructure of CHDCHD ), ZB (PEKStructure of PEKPEK )
Each chain information

Showing all 26 chains (2 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme FA ,  EA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain B  
auth_asym_id B
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain C  
auth_asym_id C
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain H  
auth_asym_id H
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 →UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id I
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain J  
auth_asym_id J
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id L
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme HB ,  GB
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain O  
auth_asym_id O
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å
Chain P  
auth_asym_id P
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id R
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id S
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id T
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å
Chain U  
auth_asym_id U
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 →UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id V
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain W  
auth_asym_id W
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id X
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id Y
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id Z
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 →UniprotKB
label_asym_ids of heme None
Available structure PDB