Danish
PDB ID:  pdb_00002y69
  • Bovine heart cytochrome c oxidase re-refined with molecular oxygen
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • Deposition date: 2011-01-20
Number of assemblies:  2
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (CHDStructure of CHDCHD ), CA (CUStructure of CUCU ), DA (OXYStructure of OXYOXY ), EA (MGStructure of MGMG ), FA (CHDStructure of CHDCHD ), GA (CUAStructure of CUACUA ), HA (PEKStructure of PEKPEK ), IA (PGVStructure of PGVPGV ), JA (PGVStructure of PGVPGV ), KA (CHDStructure of CHDCHD ), LA (ZNStructure of ZNZN ), NA (DMUStructure of DMUDMU )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 2-514 (1-514)
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme BA ,  AA
Available structure PDB
Chain B  
auth_asym_id B
Residue indices (Uniprot) 1-227 (1-227)
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id C
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 4-147 (1-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 6-109 (1-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 4-96 (1-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id H
Residue indices (Uniprot) 11-85 (1-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id I
Residue indices (Uniprot) 3-73 (1-74)
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J  
auth_asym_id J
Residue indices (Uniprot) 1-57 (1-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 6-54 (1-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id L
Residue indices (Uniprot) 2-47 (1-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-43 (1-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id T
Residue indices (Uniprot) 1-84 (1-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Assembly ID:  2  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others BB (DMUStructure of DMUDMU ), MA (CHDStructure of CHDCHD ), QA (CUStructure of CUCU ), RA (OXYStructure of OXYOXY ), SA (MGStructure of MGMG ), TA (CHDStructure of CHDCHD ), UA (CUAStructure of CUACUA ), VA (PEKStructure of PEKPEK ), WA (PGVStructure of PGVPGV ), XA (PGVStructure of PGVPGV ), YA (CHDStructure of CHDCHD ), ZA (ZNStructure of ZNZN )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-84 (1-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 2-514 (1-514)
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme PA ,  OA
Available structure PDB
Chain O  
auth_asym_id O
Residue indices (Uniprot) 2-227 (1-227)
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain P  
auth_asym_id P
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 4-147 (1-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id R
Residue indices (Uniprot) 6-109 (1-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id S
Residue indices (Uniprot) 4-96 (1-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain U  
auth_asym_id U
Residue indices (Uniprot) 11-85 (1-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id V
Residue indices (Uniprot) 3-73 (1-74)
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id W
Residue indices (Uniprot) 1-57 (1-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id X
Residue indices (Uniprot) 6-54 (1-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id Y
Residue indices (Uniprot) 2-47 (1-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id Z
Residue indices (Uniprot) 1-42 (1-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB