PDB ID:  pdb_00002zxw
  • Bovine heart cytochrome c oxidase at the fully oxidized state (1-s X-ray exposure dataset)
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • Deposition date: 2009-01-08
Number of assemblies:  2
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (CUStructure of CUCU ), AB (CHDStructure of CHDCHD ), BA (PERStructure of PERPER ), BB (TGLStructure of TGLTGL ), CA (MGStructure of MGMG ), CB (DMUStructure of DMUDMU ), DA (NAStructure of NANA ), GA (PGVStructure of PGVPGV ), HA (PGVStructure of PGVPGV ), IA (CUAStructure of CUACUA ), JA (TGLStructure of TGLTGL ), KA (PSCStructure of PSCPSC ), LA (CHDStructure of CHDCHD ), MA (DMUStructure of DMUDMU ), NA (UNXStructure of UNXUNX ), OA (CHDStructure of CHDCHD ), PA (PEKStructure of PEKPEK ), QA (PGVStructure of PGVPGV ), RA (PGVStructure of PGVPGV ), SA (CDLStructure of CDLCDL ), TA (CHDStructure of CHDCHD ), UA (TGLStructure of TGLTGL ), VA (ZNStructure of ZNZN ), WA (PEKStructure of PEKPEK ), XA (CDLStructure of CDLCDL ), YA (CHDStructure of CHDCHD ), ZA (PEKStructure of PEKPEK )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme FA ,  EA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain B  
auth_asym_id B
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain C  
auth_asym_id C
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 6-109 (44-152)
Uniprot ID P00426 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 4-96 (32-129)
Uniprot ID P00428 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain H  
auth_asym_id H
Residue indices (Uniprot) 11-85 (2-86)
Uniprot ID P00429 →UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id I
Residue indices (Uniprot) 3-73 (2-74)
Uniprot ID P04038 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J  
auth_asym_id J
Residue indices (Uniprot) 1-57 (22-80)
Uniprot ID P07470 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id L
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Assembly ID:  2  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AC (PEKStructure of PEKPEK ), BC (CDLStructure of CDLCDL ), CC (CHDStructure of CHDCHD ), DB (CUStructure of CUCU ), DC (DMUStructure of DMUDMU ), EB (PERStructure of PERPER ), FB (MGStructure of MGMG ), GB (NAStructure of NANA ), JB (TGLStructure of TGLTGL ), KB (TGLStructure of TGLTGL ), LB (PGVStructure of PGVPGV ), MB (PGVStructure of PGVPGV ), NB (PGVStructure of PGVPGV ), OB (CUAStructure of CUACUA ), PB (TGLStructure of TGLTGL ), QB (PSCStructure of PSCPSC ), RB (DMUStructure of DMUDMU ), SB (UNXStructure of UNXUNX ), TB (CHDStructure of CHDCHD ), UB (PEKStructure of PEKPEK ), VB (PEKStructure of PEKPEK ), WB (PGVStructure of PGVPGV ), XB (CDLStructure of CDLCDL ), YB (CHDStructure of CHDCHD ), ZB (ZNStructure of ZNZN )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme IB ,  HB
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain O  
auth_asym_id O
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain P  
auth_asym_id P
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id R
Residue indices (Uniprot) 6-109 (44-152)
Uniprot ID P00426 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id S
Residue indices (Uniprot) 4-96 (32-129)
Uniprot ID P00428 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id T
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain U  
auth_asym_id U
Residue indices (Uniprot) 11-85 (2-86)
Uniprot ID P00429 →UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id V
Residue indices (Uniprot) 3-73 (2-74)
Uniprot ID P04038 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id W
Residue indices (Uniprot) 1-57 (22-80)
Uniprot ID P07470 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id X
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id Y
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id Z
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 →UniprotKB
label_asym_ids of heme None
Available structure PDB