PDB ID:  pdb_00003sce
  • Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with a covalent bond between the CE1 atom of Tyr303 and the CG atom of Gln360 (TvNiRb)
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • Deposition date: 2011-06-07
Number of assemblies:  1
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 6
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others IA (PO4Structure of PO4PO4 ), IA-1 (PO4Structure of PO4PO4 ), IA-2 (PO4Structure of PO4PO4 ), JA (CAStructure of CACA ), JA-1 (CAStructure of CACA ), JA-2 (CAStructure of CACA ), K (PO4Structure of PO4PO4 ), K-1 (PO4Structure of PO4PO4 ), K-2 (PO4Structure of PO4PO4 ), KA (CAStructure of CACA ), KA-1 (CAStructure of CACA ), KA-2 (CAStructure of CACA ), L (CAStructure of CACA ), L-1 (CAStructure of CACA ), L-2 (CAStructure of CACA ), LA (PG4Structure of PG4PG4 ), LA-1 (PG4Structure of PG4PG4 ), LA-2 (PG4Structure of PG4PG4 ), M (CAStructure of CACA ), M-1 (CAStructure of CACA ), M-2 (CAStructure of CACA ), MA (PG6Structure of PG6PG6 ), MA-1 (PG6Structure of PG6PG6 ), MA-2 (PG6Structure of PG6PG6 ), N (PG4Structure of PG4PG4 ), N-1 (PG4Structure of PG4PG4 ), N-2 (PG4Structure of PG4PG4 ), NA (PG6Structure of PG6PG6 ), NA-1 (PG6Structure of PG6PG6 ), NA-2 (PG6Structure of PG6PG6 ), O (PG6Structure of PG6PG6 ), O-1 (PG6Structure of PG6PG6 ), O-2 (PG6Structure of PG6PG6 ), OA (PG6Structure of PG6PG6 ), OA-1 (PG6Structure of PG6PG6 ), OA-2 (PG6Structure of PG6PG6 ), P (PG6Structure of PG6PG6 ), P-1 (PG6Structure of PG6PG6 ), P-2 (PG6Structure of PG6PG6 ), PA (PO4Structure of PO4PO4 ), PA-1 (PO4Structure of PO4PO4 ), PA-2 (PO4Structure of PO4PO4 ), Q (PG4Structure of PG4PG4 ), Q-1 (PG4Structure of PG4PG4 ), Q-2 (PG4Structure of PG4PG4 ), QA (PG4Structure of PG4PG4 ), QA-1 (PG4Structure of PG4PG4 ), QA-2 (PG4Structure of PG4PG4 ), R (PO4Structure of PO4PO4 ), R-1 (PO4Structure of PO4PO4 ), R-2 (PO4Structure of PO4PO4 ), RA (PG4Structure of PG4PG4 ), RA-1 (PG4Structure of PG4PG4 ), RA-2 (PG4Structure of PG4PG4 ), S (PG4Structure of PG4PG4 ), S-1 (PG4Structure of PG4PG4 ), S-2 (PG4Structure of PG4PG4 ), SA (PG4Structure of PG4PG4 ), SA-1 (PG4Structure of PG4PG4 ), SA-2 (PG4Structure of PG4PG4 ), T (PG4Structure of PG4PG4 ), T-1 (PG4Structure of PG4PG4 ), T-2 (PG4Structure of PG4PG4 ), TA (PG4Structure of PG4PG4 ), TA-1 (PG4Structure of PG4PG4 ), TA-2 (PG4Structure of PG4PG4 ), U (PG4Structure of PG4PG4 ), U-1 (PG4Structure of PG4PG4 ), U-2 (PG4Structure of PG4PG4 ), UA (PG4Structure of PG4PG4 ), UA-1 (PG4Structure of PG4PG4 ), UA-2 (PG4Structure of PG4PG4 ), V (PG4Structure of PG4PG4 ), V-1 (PG4Structure of PG4PG4 ), V-2 (PG4Structure of PG4PG4 ), VA (PG4Structure of PG4PG4 ), VA-1 (PG4Structure of PG4PG4 ), VA-2 (PG4Structure of PG4PG4 ), W (PG4Structure of PG4PG4 ), W-1 (PG4Structure of PG4PG4 ), W-2 (PG4Structure of PG4PG4 ), WA (PG4Structure of PG4PG4 ), WA-1 (PG4Structure of PG4PG4 ), WA-2 (PG4Structure of PG4PG4 ), X (PG4Structure of PG4PG4 ), X-1 (PG4Structure of PG4PG4 ), X-2 (PG4Structure of PG4PG4 ), Y (NAStructure of NANA ), Y-1 (NAStructure of NANA ), Y-2 (NAStructure of NANA ), Z (NAStructure of NANA ), Z-1 (NAStructure of NANA ), Z-2 (NAStructure of NANA )
Each chain information
Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 5-523 (33-551)
Uniprot ID L0DSL2 →UniprotKB
label_asym_ids of heme J ,  I ,  H ,  G ,  F ,  E ,  D ,  C
Available structure PDB
Chain A-1 heme  
auth_asym_id A
Residue indices (Uniprot) 5-523 (33-551)
Uniprot ID L0DSL2 →UniprotKB
label_asym_ids of heme J-1 ,  I-1 ,  H-1 ,  G-1 ,  F-1 ,  E-1 ,  D-1 ,  C-1
Available structure PDB
Chain A-2 heme  
auth_asym_id A
Residue indices (Uniprot) 5-523 (33-551)
Uniprot ID L0DSL2 →UniprotKB
label_asym_ids of heme J-2 ,  I-2 ,  H-2 ,  G-2 ,  F-2 ,  E-2 ,  D-2 ,  C-2
Available structure PDB
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 5-523 (33-551)
Uniprot ID L0DSL2 →UniprotKB
label_asym_ids of heme HA ,  GA ,  FA ,  EA ,  DA ,  CA ,  BA ,  AA
Available structure PDB
Chain B-1 heme  
auth_asym_id B
Residue indices (Uniprot) 5-523 (33-551)
Uniprot ID L0DSL2 →UniprotKB
label_asym_ids of heme HA-1 ,  GA-1 ,  FA-1 ,  EA-1 ,  DA-1 ,  CA-1 ,  BA-1 ,  AA-1
Available structure PDB
Chain B-2 heme  
auth_asym_id B
Residue indices (Uniprot) 5-523 (33-551)
Uniprot ID L0DSL2 →UniprotKB
label_asym_ids of heme HA-2 ,  GA-2 ,  FA-2 ,  EA-2 ,  DA-2 ,  CA-2 ,  BA-2 ,  AA-2
Available structure PDB