Danish
PDB ID:  pdb_00004dl1
  • Crystal Structure of human Myeloperoxidase with covalent thioxanthine analog
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • Deposition date: 2012-02-05
Number of assemblies:  4
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 4
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (0KYStructure of 0KY0KY ), CA (NAGStructure of NAGNAG ), DA (NAGStructure of NAGNAG ), EA (CAStructure of CACA ), FA (CLStructure of CLCL ), HA (0KYStructure of 0KY0KY ), IA (NAGStructure of NAGNAG ), JA (NAGStructure of NAGNAG ), KA (CAStructure of CACA ), Q (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), R (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), Z (CLStructure of CLCL )
Each chain information

Showing all 4 chains (2 with heme). Show only chains with heme

Chain A  
auth_asym_id A
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain B heme  
auth_asym_id C
Residue indices (Uniprot) 113-577 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme BA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain C  
auth_asym_id B
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain D heme  
auth_asym_id D
Residue indices (Uniprot) 113-578 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme GA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 4
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others LA (CLStructure of CLCL ), NA (NAGStructure of NAGNAG ), OA (NAGStructure of NAGNAG ), PA (CAStructure of CACA ), QA (0KYStructure of 0KY0KY ), RA (CLStructure of CLCL ), S (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), T (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), TA (NAGStructure of NAGNAG ), UA (NAGStructure of NAGNAG ), VA (CAStructure of CACA ), WA (0KYStructure of 0KY0KY )
Each chain information

Showing all 4 chains (2 with heme). Show only chains with heme

Chain E  
auth_asym_id E
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain F heme  
auth_asym_id G
Residue indices (Uniprot) 113-577 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme MA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain G  
auth_asym_id F
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain H heme  
auth_asym_id H
Residue indices (Uniprot) 113-578 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme SA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Assembly ID:  3  (author_defined_assembly)    
Structural data modeled
Oligomeric count 4
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (NAGStructure of NAGNAG ), BB (NAGStructure of NAGNAG ), CB (CAStructure of CACA ), DB (CLStructure of CLCL ), FB (0KYStructure of 0KY0KY ), GB (NAGStructure of NAGNAG ), HB (NAGStructure of NAGNAG ), IB (CAStructure of CACA ), U (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), V (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), XA (CLStructure of CLCL ), ZA (0KYStructure of 0KY0KY )
Each chain information

Showing all 4 chains (2 with heme). Show only chains with heme

Chain I  
auth_asym_id I
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain J heme  
auth_asym_id K
Residue indices (Uniprot) 113-577 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme YA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain K  
auth_asym_id J
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain L heme  
auth_asym_id L
Residue indices (Uniprot) 113-578 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme EB
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Assembly ID:  4  (author_defined_assembly)    
Structural data modeled
Oligomeric count 4
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others JB (CLStructure of CLCL ), LB (NAGStructure of NAGNAG ), MB (NAGStructure of NAGNAG ), NB (CAStructure of CACA ), OB (0KYStructure of 0KY0KY ), PB (CLStructure of CLCL ), RB (CAStructure of CACA ), SB (NAGStructure of NAGNAG ), TB (0KYStructure of 0KY0KY ), W (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), X (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN , FUCStructure of FUCFUC ), Y (NAGStructure of NAGNAG , BMAStructure of BMABMA , MANStructure of MANMAN )
Each chain information

Showing all 4 chains (2 with heme). Show only chains with heme

Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain N heme  
auth_asym_id O
Residue indices (Uniprot) 113-578 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme KB
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain O  
auth_asym_id N
Residue indices (Uniprot) 1-104 (167-270)
Uniprot ID P05164 ￫UniprotKB
S-S bonds 1:14
label_asym_ids of heme None
Available structure PDB
Chain P heme  
auth_asym_id P
Residue indices (Uniprot) 113-578 (279-744)
Missing residues 150CYS-150CYS
Nonstandard amino acids Structure of CSOCSO
Uniprot ID P05164 ￫UniprotKB
S-S bonds 115:125,119:143,221:232,440:497,538:564
label_asym_ids of heme QB
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å