Danish
PDB ID:  pdb_00004gd3
  • Structure of E. coli hydrogenase-1 in complex with cytochrome b
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • Deposition date: 2012-07-31
Number of assemblies:  6
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 5
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (MGStructure of MGMG ), BA (CLStructure of CLCL ), K (SF4Structure of SF4SF4 ), L (SF4Structure of SF4SF4 ), M (F4SStructure of F4SF4S ), N (CLStructure of CLCL ), O (CLStructure of CLCL ), P (FCOStructure of FCOFCO ), Q (NIStructure of NINI ), R (MGStructure of MGMG ), S (CLStructure of CLCL ), T (SF4Structure of SF4SF4 ), U (SF4Structure of SF4SF4 ), V (F4SStructure of F4SF4S ), VA (LMTStructure of LMTLMT ), W (LMTStructure of LMTLMT ), X (CLStructure of CLCL ), Y (FCOStructure of FCOFCO ), Z (NIStructure of NINI )
Each chain information

Showing all 5 chains (1 with heme). Show only chains with heme

Chain A  
auth_asym_id S
Residue indices (Uniprot) 4-307 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain B  
auth_asym_id L
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id T
Residue indices (Uniprot) 4-303 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id M
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I heme  
auth_asym_id A
Residue indices (Uniprot) 8-210 (1-235)
Missing residues 90GLU-102TRP:116ALA-126ASN
Structural gaps Exists
Uniprot ID P0AAM1 ￫UniprotKB
label_asym_ids of heme UA ,  UA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.22 Å
Assembly ID:  2  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others K (SF4Structure of SF4SF4 ), L (SF4Structure of SF4SF4 ), M (F4SStructure of F4SF4S ), N (CLStructure of CLCL ), O (CLStructure of CLCL ), P (FCOStructure of FCOFCO ), Q (NIStructure of NINI ), R (MGStructure of MGMG ), S (CLStructure of CLCL )
Each chain information
Chain A  
auth_asym_id S
Residue indices (Uniprot) 4-307 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain B  
auth_asym_id L
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Assembly ID:  3  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (MGStructure of MGMG ), BA (CLStructure of CLCL ), T (SF4Structure of SF4SF4 ), U (SF4Structure of SF4SF4 ), V (F4SStructure of F4SF4S ), VA (LMTStructure of LMTLMT ), W (LMTStructure of LMTLMT ), X (CLStructure of CLCL ), Y (FCOStructure of FCOFCO ), Z (NIStructure of NINI )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain C  
auth_asym_id T
Residue indices (Uniprot) 4-303 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id M
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I heme  
auth_asym_id A
Residue indices (Uniprot) 8-210 (1-235)
Missing residues 90GLU-102TRP:116ALA-126ASN
Structural gaps Exists
Uniprot ID P0AAM1 ￫UniprotKB
label_asym_ids of heme UA ,  UA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.21 Å
Assembly ID:  4  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 5
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others CA (SF4Structure of SF4SF4 ), DA (SF4Structure of SF4SF4 ), EA (F4SStructure of F4SF4S ), FA (CLStructure of CLCL ), GA (CLStructure of CLCL ), HA (FCOStructure of FCOFCO ), IA (NIStructure of NINI ), JA (MGStructure of MGMG ), KA (CLStructure of CLCL ), LA (SF4Structure of SF4SF4 ), MA (SF4Structure of SF4SF4 ), NA (F4SStructure of F4SF4S ), OA (LMTStructure of LMTLMT ), PA (CLStructure of CLCL ), QA (FCOStructure of FCOFCO ), RA (NIStructure of NINI ), SA (MGStructure of MGMG ), TA (CLStructure of CLCL ), XA (LMTStructure of LMTLMT )
Each chain information

Showing all 5 chains (1 with heme). Show only chains with heme

Chain E  
auth_asym_id Q
Residue indices (Uniprot) 4-307 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id J
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id R
Residue indices (Uniprot) 4-303 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id K
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J heme  
auth_asym_id B
Residue indices (Uniprot) 8-210 (1-235)
Missing residues 90GLU-102TRP:116ALA-126ASN
Structural gaps Exists
Uniprot ID P0AAM1 ￫UniprotKB
label_asym_ids of heme WA ,  WA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.23 Å
Assembly ID:  5  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others CA (SF4Structure of SF4SF4 ), DA (SF4Structure of SF4SF4 ), EA (F4SStructure of F4SF4S ), FA (CLStructure of CLCL ), GA (CLStructure of CLCL ), HA (FCOStructure of FCOFCO ), IA (NIStructure of NINI ), JA (MGStructure of MGMG ), KA (CLStructure of CLCL )
Each chain information
Chain E  
auth_asym_id Q
Residue indices (Uniprot) 4-307 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id J
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Assembly ID:  6  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others LA (SF4Structure of SF4SF4 ), MA (SF4Structure of SF4SF4 ), NA (F4SStructure of F4SF4S ), OA (LMTStructure of LMTLMT ), PA (CLStructure of CLCL ), QA (FCOStructure of FCOFCO ), RA (NIStructure of NINI ), SA (MGStructure of MGMG ), TA (CLStructure of CLCL ), XA (LMTStructure of LMTLMT )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain G  
auth_asym_id R
Residue indices (Uniprot) 4-303 (46-372)
Mutations (UniProt numbering)
Uniprot ID P69739 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id K
Residue indices (Uniprot) 2-582 (1-582)
Uniprot ID P0ACD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J heme  
auth_asym_id B
Residue indices (Uniprot) 8-210 (1-235)
Missing residues 90GLU-102TRP:116ALA-126ASN
Structural gaps Exists
Uniprot ID P0AAM1 ￫UniprotKB
label_asym_ids of heme WA ,  WA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.21 Å