Danish
PDB ID:  pdb_00004l3y
  • Nitrite complex of TvNiR, high dose data set (NO complex)
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • Deposition date: 2013-06-07
Number of assemblies:  1
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 6
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others CA (NO2Structure of NO2NO2 ), CA-1 (NO2Structure of NO2NO2 ), CA-2 (NO2Structure of NO2NO2 ), DA (CAStructure of CACA ), DA-1 (CAStructure of CACA ), DA-2 (CAStructure of CACA ), EA (CAStructure of CACA ), EA-1 (CAStructure of CACA ), EA-2 (CAStructure of CACA ), FA (MPDStructure of MPDMPD ), FA-1 (MPDStructure of MPDMPD ), FA-2 (MPDStructure of MPDMPD ), GA (GOLStructure of GOLGOL ), GA-1 (GOLStructure of GOLGOL ), GA-2 (GOLStructure of GOLGOL ), HA (GOLStructure of GOLGOL ), HA-1 (GOLStructure of GOLGOL ), HA-2 (GOLStructure of GOLGOL ), IA (SO4Structure of SO4SO4 ), IA-1 (SO4Structure of SO4SO4 ), IA-2 (SO4Structure of SO4SO4 ), JA (NO2Structure of NO2NO2 ), JA-1 (NO2Structure of NO2NO2 ), JA-2 (NO2Structure of NO2NO2 ), K (NO2Structure of NO2NO2 ), K-1 (NO2Structure of NO2NO2 ), K-2 (NO2Structure of NO2NO2 ), KA (NO2Structure of NO2NO2 ), KA-1 (NO2Structure of NO2NO2 ), KA-2 (NO2Structure of NO2NO2 ), L (CAStructure of CACA ), L-1 (CAStructure of CACA ), L-2 (CAStructure of CACA ), M (CAStructure of CACA ), M-1 (CAStructure of CACA ), M-2 (CAStructure of CACA ), N (MPDStructure of MPDMPD ), N-1 (MPDStructure of MPDMPD ), N-2 (MPDStructure of MPDMPD ), O (GOLStructure of GOLGOL ), O-1 (GOLStructure of GOLGOL ), O-2 (GOLStructure of GOLGOL ), P (GOLStructure of GOLGOL ), P-1 (GOLStructure of GOLGOL ), P-2 (GOLStructure of GOLGOL ), Q (GOLStructure of GOLGOL ), Q-1 (GOLStructure of GOLGOL ), Q-2 (GOLStructure of GOLGOL ), R (SO4Structure of SO4SO4 ), R-1 (SO4Structure of SO4SO4 ), R-2 (SO4Structure of SO4SO4 ), S (NO2Structure of NO2NO2 ), S-1 (NO2Structure of NO2NO2 ), S-2 (NO2Structure of NO2NO2 ), T (NO2Structure of NO2NO2 ), T-1 (NO2Structure of NO2NO2 ), T-2 (NO2Structure of NO2NO2 )
Each chain information
Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 5-524 (33-551)
Mutations (UniProt numbering)
Uniprot ID L0DSL2 ￫UniprotKB
label_asym_ids of heme J ,  I ,  H ,  G ,  F ,  E ,  D ,  C
Available structure PDB
Chain A-1 heme  
auth_asym_id A
Residue indices (Uniprot) 5-524 (33-551)
Mutations (UniProt numbering)
Uniprot ID L0DSL2 ￫UniprotKB
label_asym_ids of heme J-1 ,  I-1 ,  H-1 ,  G-1 ,  F-1 ,  E-1 ,  D-1 ,  C-1
Available structure PDB
Chain A-2 heme  
auth_asym_id A
Residue indices (Uniprot) 5-524 (33-551)
Mutations (UniProt numbering)
Uniprot ID L0DSL2 ￫UniprotKB
label_asym_ids of heme J-2 ,  I-2 ,  H-2 ,  G-2 ,  F-2 ,  E-2 ,  D-2 ,  C-2
Available structure PDB
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 5-524 (33-551)
Mutations (UniProt numbering)
Uniprot ID L0DSL2 ￫UniprotKB
label_asym_ids of heme BA ,  AA ,  Z ,  Y ,  X ,  W ,  V ,  U
Available structure PDB
Chain B-1 heme  
auth_asym_id B
Residue indices (Uniprot) 5-524 (33-551)
Mutations (UniProt numbering)
Uniprot ID L0DSL2 ￫UniprotKB
label_asym_ids of heme BA-1 ,  AA-1 ,  Z-1 ,  Y-1 ,  X-1 ,  W-1 ,  V-1 ,  U-1
Available structure PDB
Chain B-2 heme  
auth_asym_id B
Residue indices (Uniprot) 5-524 (33-551)
Mutations (UniProt numbering)
Uniprot ID L0DSL2 ￫UniprotKB
label_asym_ids of heme BA-2 ,  AA-2 ,  Z-2 ,  Y-2 ,  X-2 ,  W-2 ,  V-2 ,  U-2
Available structure PDB