Danish

PDB ID: pdb_00005gth

Native XFEL structure of photosystem II (dark dataset)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposition date: 2016-08-20

Number of assemblies: 2

Assembly ID: 1 (author_defined_assembly)
Structural data	modeled
Oligomeric count	20
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others	AB (PL9 ), AC (HTG ), AD (DGD ), AE (LMT ), BB (UNL ), BC (HTG ), BD (DGD ), BE (UNL ), CB (LHG ), CC (HTG ), CD (DGD ), CE (LMG ), DB (LHG ), DC (GOL ), DD (LMG ), DE (UNL ), EB (BCT ), EC (GOL ), ED (HTG ), EE (MG ), FB (CLA ), FC (HTG ), FD (HTG ), FE (UNL ), GB (CLA ), GC (UNL ), GD (GOL ), GE (BCR ), HB (CLA ), HC (LMT ), HD (CA ), HE (SQD ), IB (CLA ), IC (LMT ), ID (PHO ), IE (LMT ), JB (CLA ), JC (LMT ), JD (LMT ), JE (UNL ), KB (CLA ), KC (LMG ), KD (LMT ), KE (LMT ), LB (CLA ), LC (CLA ), LD (CLA ), LE (CA ), MB (CLA ), MC (CLA ), MD (CLA ), ME (BCR ), NA (FE2 ), NB (CLA ), NC (CLA ), ND (BCR ), NE (CA ), OA (CL ), OB (CLA ), OC (CLA ), OD (PL9 ), PA (CL ), PB (CLA ), PC (CLA ), PD (LHG ), PE (HTG ), QA (CLA ), QB (CLA ), QC (CLA ), QD (LHG ), QE (UNL ), RA (CLA ), RB (CLA ), RC (CLA ), RD (UNL ), RE (BCR ), SA (CLA ), SB (CLA ), SC (CLA ), SD (UNL ), SE (LMG ), TA (PHO ), TB (CLA ), TC (CLA ), TD (HTG ), TE (LMG ), UA (CLA ), UB (CLA ), UC (CLA ), UD (SQD ), VA (BCR ), VB (BCR ), VC (CLA ), VD (LHG ), WA (SQD ), WB (BCR ), WC (CLA ), WD (LMT ), XA (GOL ), XB (BCR ), XC (CLA ), YA (SQD ), YB (SQD ), YC (BCR ), YD (BCR ), ZA (OEX ), ZB (LMG ), ZC (BCR ), ZD (DGD )

Each chain information

Showing all 20 chains (3 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	11-344 (1-344)
Mutations (UniProt numbering)
Uniprot ID	P51765 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-505 (1-505)
Uniprot ID	D0VWR1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	23-473 (1-451)
Uniprot ID	D0VWR7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	11-352 (1-342)
Uniprot ID	D0VWR8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	4-84 (1-84)
Uniprot ID	P12238 ￫UniprotKB
label_asym_ids of heme	XD
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	12-45 (2-45)
Uniprot ID	P12239 ￫UniprotKB
label_asym_ids of heme	XD
Available structure	PDB

Chain G
auth_asym_id	H
Residue indices (Uniprot)	2-65 (1-65)
Uniprot ID	P19052 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-38 (1-38)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	P12240 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain I
auth_asym_id	J
Residue indices (Uniprot)	2-39 (2-40)
Uniprot ID	Q7DGD4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	10-46 (1-37)
Mutations (UniProt numbering)
Uniprot ID	P19054 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	2-37 (1-37)
Uniprot ID	P12241 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	M
Residue indices (Uniprot)	1-33 (1-36)
Mutations (UniProt numbering)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	P12312 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain M
auth_asym_id	O
Residue indices (Uniprot)	4-246 (1-244)
Uniprot ID	D0VWR2 ￫UniprotKB
S-S bonds	19:44
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	T
Residue indices (Uniprot)	1-30 (1-32)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	P12313 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain O
auth_asym_id	U
Residue indices (Uniprot)	9-104 (1-104)
Uniprot ID	P56152 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P heme
auth_asym_id	V
Residue indices (Uniprot)	1-137 (27-163)
Uniprot ID	P0A387 ￫UniprotKB
label_asym_ids of heme	OE
Available structure	PDB

Chain Q
auth_asym_id	X
Residue indices (Uniprot)	2-39 (1-40)
Uniprot ID	D0VWR4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	Y
Residue indices (Uniprot)	18-46 (1-30)
Uniprot ID	D0VWR3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	Z
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	D0VWR5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	R
Residue indices (Uniprot)	2-35 (1-34)
Uniprot ID	P0DM37 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Assembly ID: 2 (author_defined_assembly)
Structural data	modeled
Oligomeric count	19
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others	AF (PHO ), AG (CLA ), AH (CLA ), AI (LMT ), BF (CLA ), BG (CLA ), BH (CLA ), CF (BCR ), CG (BCR ), CH (BCR ), CI (SQD ), DF (SQD ), DG (BCR ), DH (BCR ), DI (BCR ), EF (GOL ), EG (BCR ), EH (DGD ), EI (DGD ), FF (SQD ), FG (LMG ), FH (DGD ), FI (UNL ), GF (OEX ), GG (LMT ), GH (DGD ), GI (LMG ), HF (PL9 ), HG (HTG ), HH (LMG ), HI (UNL ), IF (UNL ), IG (HTG ), IH (LMG ), II (MG ), JF (LMG ), JG (GOL ), JH (HTG ), JI (BCR ), KF (LMT ), KG (HTG ), KH (HTG ), KI (LHG ), LF (BCT ), LG (UNL ), LH (CA ), LI (UNL ), MF (CLA ), MG (LMT ), MH (CA ), MI (LMT ), NF (CLA ), NG (HTG ), NH (UNL ), NI (CA ), OF (CLA ), OG (UNL ), OH (CLA ), OI (BCR ), PF (CLA ), PG (CLA ), PH (GOL ), QF (CLA ), QG (CLA ), QH (CLA ), QI (UNL ), RF (CLA ), RG (CLA ), RH (CLA ), RI (BCR ), SF (CLA ), SG (CLA ), SH (BCR ), SI (LMG ), TF (CLA ), TG (CLA ), TH (PL9 ), UE (FE2 ), UF (CLA ), UG (CLA ), UH (LHG ), VE (CL ), VF (CLA ), VG (CLA ), VH (LHG ), WE (CL ), WF (CLA ), WG (CLA ), WH (LHG ), XE (CLA ), XF (CLA ), XG (CLA ), XH (UNL ), YE (CLA ), YF (CLA ), YG (CLA ), YH (HTG ), ZE (PHO ), ZF (CLA ), ZG (CLA ), ZH (LHG )

Each chain information

Showing all 19 chains (3 with heme). Show only chains with heme

Chain AA
auth_asym_id	h
Residue indices (Uniprot)	2-66 (1-65)
Uniprot ID	P19052 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	i
Residue indices (Uniprot)	1-38 (1-38)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	P12240 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain CA
auth_asym_id	j
Residue indices (Uniprot)	1-39 (2-40)
Uniprot ID	Q7DGD4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (1-37)
Mutations (UniProt numbering)
Uniprot ID	P19054 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	l
Residue indices (Uniprot)	2-37 (1-37)
Uniprot ID	P12241 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain FA
auth_asym_id	m
Residue indices (Uniprot)	1-34 (1-36)
Mutations (UniProt numbering)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	P12312 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.16 Å

Chain GA
auth_asym_id	o
Residue indices (Uniprot)	4-246 (1-244)
Uniprot ID	D0VWR2 ￫UniprotKB
S-S bonds	19:44
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	t
Residue indices (Uniprot)	1-30 (1-32)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	P12313 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain IA
auth_asym_id	u
Residue indices (Uniprot)	8-104 (1-104)
Uniprot ID	P56152 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA heme
auth_asym_id	v
Residue indices (Uniprot)	1-137 (27-163)
Uniprot ID	P0A387 ￫UniprotKB
label_asym_ids of heme	PI
Available structure	PDB

Chain KA
auth_asym_id	x
Residue indices (Uniprot)	2-39 (1-40)
Uniprot ID	D0VWR4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	y
Residue indices (Uniprot)	18-46 (1-30)
Uniprot ID	D0VWR3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain MA
auth_asym_id	z
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	D0VWR5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	a
Residue indices (Uniprot)	11-344 (1-344)
Mutations (UniProt numbering)
Uniprot ID	P51765 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	b
Residue indices (Uniprot)	2-505 (1-505)
Uniprot ID	D0VWR1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	c
Residue indices (Uniprot)	19-473 (1-451)
Uniprot ID	D0VWR7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	d
Residue indices (Uniprot)	12-352 (1-342)
Uniprot ID	D0VWR8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y heme
auth_asym_id	e
Residue indices (Uniprot)	6-84 (1-84)
Uniprot ID	P12238 ￫UniprotKB
label_asym_ids of heme	BI
Available structure	PDB

Chain Z heme
auth_asym_id	f
Residue indices (Uniprot)	15-45 (2-45)
Uniprot ID	P12239 ￫UniprotKB
label_asym_ids of heme	BI
Available structure	PDB