Danish
PDB ID:  pdb_00005w97
  • Crystal Structure of CO-bound Cytochrome c Oxidase determined by Serial Femtosecond X-Ray Crystallography at Room Temperature
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • Deposition date: 2017-06-22
Number of assemblies:  1
Assembly ID:  0  (author_defined_assembly)    
Structural data modeled
Oligomeric count 26
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (CHDStructure of CHDCHD ), AC (TGLStructure of TGLTGL ), BB (TGLStructure of TGLTGL ), BC (DMUStructure of DMUDMU ), CA (CUStructure of CUCU ), CB (DMUStructure of DMUDMU ), DA (MGStructure of MGMG ), EA (NAStructure of NANA ), FA (PGVStructure of PGVPGV ), FB (CUStructure of CUCU ), GA (PGVStructure of PGVPGV ), GB (MGStructure of MGMG ), HA (TGLStructure of TGLTGL ), HB (NAStructure of NANA ), IA (CMOStructure of CMOCMO ), IB (TGLStructure of TGLTGL ), JA (CUAStructure of CUACUA ), JB (PGVStructure of PGVPGV ), KA (PSCStructure of PSCPSC ), KB (CMOStructure of CMOCMO ), LA (CHDStructure of CHDCHD ), LB (CHDStructure of CHDCHD ), MA (CHDStructure of CHDCHD ), MB (CUAStructure of CUACUA ), NA (PEKStructure of PEKPEK ), NB (PGVStructure of PGVPGV ), OA (PGVStructure of PGVPGV ), OB (CHDStructure of CHDCHD ), PA (PGVStructure of PGVPGV ), PB (PEKStructure of PEKPEK ), QA (CDLStructure of CDLCDL ), QB (PGVStructure of PGVPGV ), RA (CHDStructure of CHDCHD ), RB (CDLStructure of CDLCDL ), SA (DMUStructure of DMUDMU ), SB (CHDStructure of CHDCHD ), TA (PEKStructure of PEKPEK ), TB (DMUStructure of DMUDMU ), UA (PEKStructure of PEKPEK ), UB (PSCStructure of PSCPSC ), VA (TGLStructure of TGLTGL ), VB (ZNStructure of ZNZN ), WA (ZNStructure of ZNZN ), WB (PEKStructure of PEKPEK ), XA (CDLStructure of CDLCDL ), XB (CDLStructure of CDLCDL ), YA (PEKStructure of PEKPEK ), YB (TGLStructure of TGLTGL ), ZA (PGVStructure of PGVPGV ), ZB (CHDStructure of CHDCHD )
Each chain information

Showing all 26 chains (2 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme BA ,  AA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain B  
auth_asym_id B
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain C  
auth_asym_id C
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain H  
auth_asym_id H
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id I
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain J  
auth_asym_id J
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id L
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N heme  
auth_asym_id a
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme EB ,  DB
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Chain O  
auth_asym_id b
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Chain P  
auth_asym_id c
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id d
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id e
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id f
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id g
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain U  
auth_asym_id h
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id i
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain W  
auth_asym_id j
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id k
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id l
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id m
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB