PDB ID:  pdb_00005ws5
  • Native XFEL structure of photosystem II (preflash dark dataset)
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • Deposition date: 2016-12-05
Number of assemblies:  2
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 20
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (PL9Structure of PL9PL9 ), AC (HTGStructure of HTGHTG ), AD (LMGStructure of LMGLMG ), AE (MGStructure of MGMG ), BB (UNLStructure of UNLUNL ), BC (HTGStructure of HTGHTG ), BD (HTGStructure of HTGHTG ), BE (UNLStructure of UNLUNL ), CB (BCTStructure of BCTBCT ), CC (GOLStructure of GOLGOL ), CD (GOLStructure of GOLGOL ), CE (BCRStructure of BCRBCR ), DB (PHOStructure of PHOPHO ), DC (GOLStructure of GOLGOL ), DD (CAStructure of CACA ), DE (LHGStructure of LHGLHG ), EB (LMTStructure of LMTLMT ), EC (HTGStructure of HTGHTG ), ED (LMTStructure of LMTLMT ), EE (LMTStructure of LMTLMT ), FB (CLAStructure of CLACLA ), FC (UNLStructure of UNLUNL ), FD (CLAStructure of CLACLA ), FE (UNLStructure of UNLUNL ), GB (CLAStructure of CLACLA ), GC (LMGStructure of LMGLMG ), GD (CLAStructure of CLACLA ), GE (LMTStructure of LMTLMT ), HB (CLAStructure of CLACLA ), HC (CLAStructure of CLACLA ), HD (BCRStructure of BCRBCR ), HE (CAStructure of CACA ), IB (CLAStructure of CLACLA ), IC (CLAStructure of CLACLA ), ID (PL9Structure of PL9PL9 ), IE (BCRStructure of BCRBCR ), JB (CLAStructure of CLACLA ), JC (CLAStructure of CLACLA ), JD (LHGStructure of LHGLHG ), JE (GOLStructure of GOLGOL ), KB (CLAStructure of CLACLA ), KC (CLAStructure of CLACLA ), KD (LHGStructure of LHGLHG ), LB (CLAStructure of CLACLA ), LC (CLAStructure of CLACLA ), LD (LHGStructure of LHGLHG ), LE (HTGStructure of HTGHTG ), MB (CLAStructure of CLACLA ), MC (CLAStructure of CLACLA ), MD (UNLStructure of UNLUNL ), ME (UNLStructure of UNLUNL ), NA (FE2Structure of FE2FE2 ), NB (CLAStructure of CLACLA ), NC (CLAStructure of CLACLA ), ND (UNLStructure of UNLUNL ), NE (BCRStructure of BCRBCR ), OA (CLStructure of CLCL ), OB (CLAStructure of CLACLA ), OC (CLAStructure of CLACLA ), OD (HTGStructure of HTGHTG ), OE (LMGStructure of LMGLMG ), PA (CLStructure of CLCL ), PB (CLAStructure of CLACLA ), PC (CLAStructure of CLACLA ), PD (LMGStructure of LMGLMG ), QA (CLAStructure of CLACLA ), QB (CLAStructure of CLACLA ), QC (CLAStructure of CLACLA ), QD (LHGStructure of LHGLHG ), RA (CLAStructure of CLACLA ), RB (CLAStructure of CLACLA ), RC (CLAStructure of CLACLA ), RD (LMTStructure of LMTLMT ), SA (CLAStructure of CLACLA ), SB (CLAStructure of CLACLA ), SC (CLAStructure of CLACLA ), TA (PHOStructure of PHOPHO ), TB (CLAStructure of CLACLA ), TC (CLAStructure of CLACLA ), TD (SQDStructure of SQDSQD ), UA (CLAStructure of CLACLA ), UB (CLAStructure of CLACLA ), UC (BCRStructure of BCRBCR ), UD (CAStructure of CACA ), VA (BCRStructure of BCRBCR ), VB (BCRStructure of BCRBCR ), VC (BCRStructure of BCRBCR ), VD (BCRStructure of BCRBCR ), WA (SQDStructure of SQDSQD ), WB (BCRStructure of BCRBCR ), WC (DGDStructure of DGDDGD ), WD (DGDStructure of DGDDGD ), XA (GOLStructure of GOLGOL ), XB (BCRStructure of BCRBCR ), XC (DGDStructure of DGDDGD ), XD (LMTStructure of LMTLMT ), YA (SQDStructure of SQDSQD ), YB (SQDStructure of SQDSQD ), YC (DGDStructure of DGDDGD ), YD (UNLStructure of UNLUNL ), ZA (OEXStructure of OEXOEX ), ZB (LMGStructure of LMGLMG ), ZC (LMGStructure of LMGLMG ), ZD (UNLStructure of UNLUNL )
Each chain information

Showing 3 chains with heme of 20. Show all chains

Chain E heme  
auth_asym_id E
Residue indices (Uniprot) 4-84 (1-84)
Uniprot ID P12238 →UniprotKB
label_asym_ids of heme SD
Available structure PDB
Chain F heme  
auth_asym_id F
Residue indices (Uniprot) 12-45 (2-45)
Uniprot ID P12239 →UniprotKB
label_asym_ids of heme SD
Available structure PDB
Chain P heme  
auth_asym_id V
Residue indices (Uniprot) 1-137 (27-163)
Uniprot ID P0A387 →UniprotKB
label_asym_ids of heme KE
Available structure PDB
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 19
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AF (GOLStructure of GOLGOL ), AG (BCRStructure of BCRBCR ), AH (BCRStructure of BCRBCR ), AI (BCRStructure of BCRBCR ), BF (SQDStructure of SQDSQD ), BG (BCRStructure of BCRBCR ), BH (DGDStructure of DGDDGD ), BI (DGDStructure of DGDDGD ), CF (LMTStructure of LMTLMT ), CG (BCRStructure of BCRBCR ), CH (DGDStructure of DGDDGD ), CI (UNLStructure of UNLUNL ), DF (OEXStructure of OEXOEX ), DG (SQDStructure of SQDSQD ), DH (DGDStructure of DGDDGD ), DI (UNLStructure of UNLUNL ), EF (PL9Structure of PL9PL9 ), EG (LMTStructure of LMTLMT ), EH (LMGStructure of LMGLMG ), EI (MGStructure of MGMG ), FF (UNLStructure of UNLUNL ), FG (HTGStructure of HTGHTG ), FH (LMGStructure of LMGLMG ), FI (BCRStructure of BCRBCR ), GF (GOLStructure of GOLGOL ), GG (HTGStructure of HTGHTG ), GH (HTGStructure of HTGHTG ), GI (LHGStructure of LHGLHG ), HF (PHOStructure of PHOPHO ), HG (GOLStructure of GOLGOL ), HH (CAStructure of CACA ), HI (LMGStructure of LMGLMG ), IF (LMGStructure of LMGLMG ), IG (HTGStructure of HTGHTG ), IH (CAStructure of CACA ), II (UNLStructure of UNLUNL ), JF (LMTStructure of LMTLMT ), JG (UNLStructure of UNLUNL ), JH (UNLStructure of UNLUNL ), JI (LMTStructure of LMTLMT ), KF (CLAStructure of CLACLA ), KG (LMTStructure of LMTLMT ), KH (CLAStructure of CLACLA ), KI (CAStructure of CACA ), LF (CLAStructure of CLACLA ), LG (GOLStructure of GOLGOL ), LH (CLAStructure of CLACLA ), LI (LMTStructure of LMTLMT ), MF (CLAStructure of CLACLA ), MG (CLAStructure of CLACLA ), MH (BCRStructure of BCRBCR ), MI (LMTStructure of LMTLMT ), NF (CLAStructure of CLACLA ), NG (CLAStructure of CLACLA ), NH (PL9Structure of PL9PL9 ), NI (BCRStructure of BCRBCR ), OF (CLAStructure of CLACLA ), OG (CLAStructure of CLACLA ), OH (LHGStructure of LHGLHG ), OI (GOLStructure of GOLGOL ), PE (FE2Structure of FE2FE2 ), PF (CLAStructure of CLACLA ), PG (CLAStructure of CLACLA ), PH (LHGStructure of LHGLHG ), QE (CLStructure of CLCL ), QF (CLAStructure of CLACLA ), QG (CLAStructure of CLACLA ), QH (LHGStructure of LHGLHG ), QI (UNLStructure of UNLUNL ), RE (CLStructure of CLCL ), RF (CLAStructure of CLACLA ), RG (CLAStructure of CLACLA ), RH (UNLStructure of UNLUNL ), RI (BCRStructure of BCRBCR ), SE (BCTStructure of BCTBCT ), SF (CLAStructure of CLACLA ), SG (CLAStructure of CLACLA ), SH (UNLStructure of UNLUNL ), SI (LMGStructure of LMGLMG ), TE (CLAStructure of CLACLA ), TF (CLAStructure of CLACLA ), TG (CLAStructure of CLACLA ), TH (HTGStructure of HTGHTG ), UE (CLAStructure of CLACLA ), UF (CLAStructure of CLACLA ), UG (CLAStructure of CLACLA ), UH (LMGStructure of LMGLMG ), VE (CLAStructure of CLACLA ), VF (CLAStructure of CLACLA ), VG (CLAStructure of CLACLA ), VH (LHGStructure of LHGLHG ), WE (PHOStructure of PHOPHO ), WF (CLAStructure of CLACLA ), WG (CLAStructure of CLACLA ), WH (LMTStructure of LMTLMT ), XE (CLAStructure of CLACLA ), XF (CLAStructure of CLACLA ), XG (CLAStructure of CLACLA ), YE (BCRStructure of BCRBCR ), YF (CLAStructure of CLACLA ), YG (CLAStructure of CLACLA ), YH (SQDStructure of SQDSQD ), ZE (SQDStructure of SQDSQD ), ZF (CLAStructure of CLACLA ), ZG (BCRStructure of BCRBCR ), ZH (CAStructure of CACA )
Each chain information

Showing 3 chains with heme of 19. Show all chains

Chain JA heme  
auth_asym_id v
Residue indices (Uniprot) 1-137 (27-163)
Uniprot ID P0A387 →UniprotKB
label_asym_ids of heme PI
Available structure PDB
Chain Y heme  
auth_asym_id e
Residue indices (Uniprot) 6-84 (1-84)
Uniprot ID P12238 →UniprotKB
label_asym_ids of heme XH
Available structure PDB
Chain Z heme  
auth_asym_id f
Residue indices (Uniprot) 15-45 (2-45)
Uniprot ID P12239 →UniprotKB
label_asym_ids of heme XH
Available structure PDB