Danish
PDB ID:  pdb_00005zco
  • azide-bound cytochrome c oxidase structure determined using the crystals exposed to 2 mM azide solution for 2 days
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • Deposition date: 2018-02-19
Number of assemblies:  2
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (CHDStructure of CHDCHD ), AC (EDOStructure of EDOEDO ), BB (DMUStructure of DMUDMU ), BC (CHDStructure of CHDCHD ), CA (CUStructure of CUCU ), CB (UNXStructure of UNXUNX ), CC (TGLStructure of TGLTGL ), DA (MGStructure of MGMG ), DB (PGVStructure of PGVPGV ), DC (EDOStructure of EDOEDO ), EA (NAStructure of NANA ), EB (CDLStructure of CDLCDL ), EC (DMUStructure of DMUDMU ), FA (AZIStructure of AZIAZI ), FB (CHDStructure of CHDCHD ), FC (EDOStructure of EDOEDO ), GA (AZIStructure of AZIAZI ), GB (PEKStructure of PEKPEK ), HA (PGVStructure of PGVPGV ), HB (PGVStructure of PGVPGV ), IA (PGVStructure of PGVPGV ), IB (PEKStructure of PEKPEK ), JA (EDOStructure of EDOEDO ), JB (DMUStructure of DMUDMU ), KA (EDOStructure of EDOEDO ), KB (DMUStructure of DMUDMU ), LA (EDOStructure of EDOEDO ), LB (TGLStructure of TGLTGL ), MA (EDOStructure of EDOEDO ), MB (EDOStructure of EDOEDO ), NA (EDOStructure of EDOEDO ), NB (EDOStructure of EDOEDO ), OA (EDOStructure of EDOEDO ), OB (PSCStructure of PSCPSC ), PA (EDOStructure of EDOEDO ), PB (EDOStructure of EDOEDO ), QA (EDOStructure of EDOEDO ), QB (EDOStructure of EDOEDO ), RA (EDOStructure of EDOEDO ), RB (EDOStructure of EDOEDO ), SA (EDOStructure of EDOEDO ), SB (ZNStructure of ZNZN ), TA (TGLStructure of TGLTGL ), TB (EDOStructure of EDOEDO ), UA (CHDStructure of CHDCHD ), UB (EDOStructure of EDOEDO ), VA (CUAStructure of CUACUA ), VB (EDOStructure of EDOEDO ), WA (EDOStructure of EDOEDO ), WB (PEKStructure of PEKPEK ), XA (EDOStructure of EDOEDO ), XB (CHDStructure of CHDCHD ), YA (EDOStructure of EDOEDO ), YB (PEKStructure of PEKPEK ), ZA (EDOStructure of EDOEDO ), ZB (EDOStructure of EDOEDO )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme BA ,  AA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain B  
auth_asym_id B
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Chain C  
auth_asym_id C
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain H  
auth_asym_id H
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id I
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain J  
auth_asym_id J
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id L
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AD (CUAStructure of CUACUA ), AE (EDOStructure of EDOEDO ), BD (PSCStructure of PSCPSC ), BE (PGVStructure of PGVPGV ), CD (EDOStructure of EDOEDO ), CE (DMUStructure of DMUDMU ), DD (CHDStructure of CHDCHD ), ED (UNXStructure of UNXUNX ), FD (PGVStructure of PGVPGV ), GC (CDLStructure of CDLCDL ), GD (CDLStructure of CDLCDL ), HD (CHDStructure of CHDCHD ), ID (DMUStructure of DMUDMU ), JC (CUStructure of CUCU ), JD (PEKStructure of PEKPEK ), KC (MGStructure of MGMG ), KD (DMUStructure of DMUDMU ), LC (NAStructure of NANA ), LD (DMUStructure of DMUDMU ), MC (AZIStructure of AZIAZI ), MD (EDOStructure of EDOEDO ), NC (AZIStructure of AZIAZI ), ND (EDOStructure of EDOEDO ), OC (PGVStructure of PGVPGV ), OD (EDOStructure of EDOEDO ), PC (TGLStructure of TGLTGL ), PD (TGLStructure of TGLTGL ), QC (EDOStructure of EDOEDO ), QD (EDOStructure of EDOEDO ), RC (EDOStructure of EDOEDO ), RD (ZNStructure of ZNZN ), SC (EDOStructure of EDOEDO ), SD (EDOStructure of EDOEDO ), TC (EDOStructure of EDOEDO ), TD (EDOStructure of EDOEDO ), UC (EDOStructure of EDOEDO ), UD (PEKStructure of PEKPEK ), VC (EDOStructure of EDOEDO ), VD (CDLStructure of CDLCDL ), WC (EDOStructure of EDOEDO ), WD (EDOStructure of EDOEDO ), XC (EDOStructure of EDOEDO ), XD (PGVStructure of PGVPGV ), YC (EDOStructure of EDOEDO ), YD (CHDStructure of CHDCHD ), ZC (EDOStructure of EDOEDO ), ZD (TGLStructure of TGLTGL )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme IC ,  HC
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain O  
auth_asym_id O
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain P  
auth_asym_id P
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id R
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id S
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id T
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain U  
auth_asym_id U
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id V
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain W  
auth_asym_id W
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id X
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id Y
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id Z
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB