Danish
PDB ID:  pdb_00005zcp
  • azide-bound cytochrome c oxidase structure determined using the crystals exposed to 20 mM azide solution for 2 days
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • Deposition date: 2018-02-19
Number of assemblies:  2
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (EDOStructure of EDOEDO ), AC (EDOStructure of EDOEDO ), BB (CHDStructure of CHDCHD ), BC (EDOStructure of EDOEDO ), CA (CUStructure of CUCU ), CB (DMUStructure of DMUDMU ), CC (CHDStructure of CHDCHD ), DA (MGStructure of MGMG ), DB (UNXStructure of UNXUNX ), DC (EDOStructure of EDOEDO ), EA (NAStructure of NANA ), EB (PGVStructure of PGVPGV ), EC (DMUStructure of DMUDMU ), FA (AZIStructure of AZIAZI ), FB (CDLStructure of CDLCDL ), FC (EDOStructure of EDOEDO ), GA (AZIStructure of AZIAZI ), GB (CHDStructure of CHDCHD ), HA (TGLStructure of TGLTGL ), HB (PEKStructure of PEKPEK ), IA (PGVStructure of PGVPGV ), IB (PGVStructure of PGVPGV ), JA (PGVStructure of PGVPGV ), JB (PEKStructure of PEKPEK ), KA (TGLStructure of TGLTGL ), KB (DMUStructure of DMUDMU ), LA (EDOStructure of EDOEDO ), LB (DMUStructure of DMUDMU ), MA (EDOStructure of EDOEDO ), MB (EDOStructure of EDOEDO ), NA (EDOStructure of EDOEDO ), NB (TGLStructure of TGLTGL ), OA (EDOStructure of EDOEDO ), OB (EDOStructure of EDOEDO ), PA (EDOStructure of EDOEDO ), PB (EDOStructure of EDOEDO ), QA (EDOStructure of EDOEDO ), QB (EDOStructure of EDOEDO ), RA (EDOStructure of EDOEDO ), RB (EDOStructure of EDOEDO ), SA (EDOStructure of EDOEDO ), SB (EDOStructure of EDOEDO ), TA (EDOStructure of EDOEDO ), TB (ZNStructure of ZNZN ), UA (CHDStructure of CHDCHD ), UB (EDOStructure of EDOEDO ), VA (CUAStructure of CUACUA ), VB (EDOStructure of EDOEDO ), WA (PSCStructure of PSCPSC ), WB (EDOStructure of EDOEDO ), XA (EDOStructure of EDOEDO ), XB (PEKStructure of PEKPEK ), YA (EDOStructure of EDOEDO ), YB (CHDStructure of CHDCHD ), ZA (EDOStructure of EDOEDO ), ZB (PEKStructure of PEKPEK )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme BA ,  AA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain B  
auth_asym_id B
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain C  
auth_asym_id C
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain H  
auth_asym_id H
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id I
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain J  
auth_asym_id J
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id L
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AD (EDOStructure of EDOEDO ), AE (TGLStructure of TGLTGL ), BD (CUAStructure of CUACUA ), BE (EDOStructure of EDOEDO ), CD (EDOStructure of EDOEDO ), CE (DMUStructure of DMUDMU ), DD (CHDStructure of CHDCHD ), ED (PGVStructure of PGVPGV ), FD (UNXStructure of UNXUNX ), GC (CDLStructure of CDLCDL ), GD (PGVStructure of PGVPGV ), HD (CDLStructure of CDLCDL ), ID (CHDStructure of CHDCHD ), JC (CUStructure of CUCU ), JD (DMUStructure of DMUDMU ), KC (MGStructure of MGMG ), KD (PEKStructure of PEKPEK ), LC (NAStructure of NANA ), LD (DMUStructure of DMUDMU ), MC (AZIStructure of AZIAZI ), MD (DMUStructure of DMUDMU ), NC (AZIStructure of AZIAZI ), ND (EDOStructure of EDOEDO ), OC (PGVStructure of PGVPGV ), OD (EDOStructure of EDOEDO ), PC (PGVStructure of PGVPGV ), PD (TGLStructure of TGLTGL ), QC (TGLStructure of TGLTGL ), QD (EDOStructure of EDOEDO ), RC (PSCStructure of PSCPSC ), RD (ZNStructure of ZNZN ), SC (EDOStructure of EDOEDO ), SD (EDOStructure of EDOEDO ), TC (EDOStructure of EDOEDO ), TD (EDOStructure of EDOEDO ), UC (EDOStructure of EDOEDO ), UD (EDOStructure of EDOEDO ), VC (EDOStructure of EDOEDO ), VD (PEKStructure of PEKPEK ), WC (EDOStructure of EDOEDO ), WD (CDLStructure of CDLCDL ), XC (EDOStructure of EDOEDO ), XD (EDOStructure of EDOEDO ), YC (EDOStructure of EDOEDO ), YD (CHDStructure of CHDCHD ), ZC (EDOStructure of EDOEDO ), ZD (EDOStructure of EDOEDO )
Each chain information

Showing all 13 chains (1 with heme). Show only chains with heme

Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 ￫UniprotKB
label_asym_ids of heme IC ,  HC
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain O  
auth_asym_id O
Residue indices (Uniprot) 1-227 (1-227)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P68530 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain P  
auth_asym_id P
Residue indices (Uniprot) 3-261 (1-261)
Uniprot ID P00415 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 4-147 (23-169)
Uniprot ID P00423 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id R
Residue indices (Uniprot) 5-109 (44-152)
Uniprot ID P00426 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id S
Residue indices (Uniprot) 1-98 (32-129)
Uniprot ID P00428 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id T
Residue indices (Uniprot) 1-84 (13-97)
Missing residues 11THR-11THR
Nonstandard amino acids Structure of TPOTPO
Uniprot ID P07471 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain U  
auth_asym_id U
Residue indices (Uniprot) 7-85 (2-86)
Uniprot ID P00429 ￫UniprotKB
S-S bonds 29:64,39:53
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id V
Residue indices (Uniprot) 1-73 (2-74)
Missing residues 1SER-1SER
Nonstandard amino acids Structure of SACSAC
Uniprot ID P04038 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain W  
auth_asym_id W
Residue indices (Uniprot) 1-58 (22-80)
Uniprot ID P07470 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id X
Residue indices (Uniprot) 6-54 (25-80)
Uniprot ID P13183 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id Y
Residue indices (Uniprot) 2-47 (17-63)
Uniprot ID P00430 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id Z
Residue indices (Uniprot) 1-43 (25-70)
Uniprot ID P10175 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB