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PDB ID: pdb_00005zzn

Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposition date: 2018-06-03

Number of assemblies: 2

Assembly ID: 1 (author_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	19
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others	AB (LMT ), AC (BCR ), AD (CLA ), AE (DMS ), AF (DMS ), AG (LMT ), AH (DMS ), BB (DMS ), BC (LHG ), BD (CLA ), BE (DMS ), BF (DMS ), BG (CA ), BH (CA ), CB (DMS ), CC (LMG ), CD (CLA ), CE (DMS ), CF (LHG ), CG (HTG ), CH (BCR ), DB (DMS ), DC (LMT ), DD (CLA ), DE (DMS ), DF (UNL ), DG (DMS ), DH (UNL ), EB (DMS ), EC (HTG ), ED (CLA ), EE (GOL ), EF (UNL ), EG (DMS ), EH (LMT ), FB (UNL ), FC (UNL ), FD (CLA ), FE (DMS ), FF (DMS ), FG (DMS ), FH (UNL ), GB (UNL ), GC (UNL ), GD (CLA ), GE (HTG ), GG (DMS ), HB (CA ), HC (UNL ), HD (CLA ), HE (HTG ), HF (LMT ), HG (DMS ), IB (CLA ), IC (HTG ), ID (CLA ), IE (FE2 ), IF (LHG ), IG (DMS ), JB (CLA ), JC (HTG ), JD (CLA ), JE (BCT ), JF (DGD ), JG (DMS ), KB (CLA ), KC (UNL ), KD (CLA ), KE (CLA ), KF (RRX ), KG (DMS ), LB (CLA ), LC (DMS ), LD (BCR ), LE (PHO ), LF (UNL ), LG (DMS ), MA (OEX ), MB (CLA ), MC (DMS ), MD (DGD ), ME (CLA ), MF (UNL ), MG (DMS ), NA (CL ), NB (CLA ), NC (DMS ), ND (DGD ), NE (BCR ), NF (UNL ), NG (BCR ), OA (CL ), OB (CLA ), OC (DMS ), OD (DGD ), OE (PL9 ), OF (UNL ), OG (LMT ), PA (CLA ), PB (CLA ), PC (DMS ), PD (LMG ), PE (DGD ), PF (UNL ), PG (UNL ), QA (CLA ), QB (CLA ), QC (DMS ), QD (LMG ), QE (LHG ), QF (UNL ), QG (UNL ), RA (CLA ), RB (CLA ), RC (DMS ), RD (LMT ), RE (LHG ), RF (DMS ), RG (DMS ), SA (PHO ), SB (CLA ), SC (DMS ), SD (HTG ), SE (LHG ), SF (MG ), SG (HTG ), TA (CLA ), TB (CLA ), TC (DMS ), TD (HTG ), TE (LMG ), TF (LMT ), UA (BCR ), UB (CLA ), UC (DMS ), UD (UNL ), UE (HTG ), UF (UNL ), UG (HTG ), VA (PL9 ), VB (CLA ), VC (DMS ), VD (UNL ), VE (UNL ), VF (BCR ), VG (DMS ), WA (LMG ), WB (CLA ), WC (HTG ), WD (DMS ), WE (DMS ), WF (BCR ), WG (DMS ), XA (UNL ), XB (CLA ), XC (UNL ), XD (DMS ), XE (DMS ), XF (UNL ), XG (DMS ), YA (UNL ), YB (BCR ), YC (CLA ), YD (DMS ), YE (GOL ), YF (MG ), YG (DMS ), ZA (UNL ), ZB (BCR ), ZC (CLA ), ZD (DMS ), ZE (DMS ), ZF (LMT ), ZG (DMS )

Each chain information

Showing all 19 chains (3 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	11-344 (11-344)
Uniprot ID	P0A444 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-506 (2-506)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	23-473 (7-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	11-352 (11-352)
Mutations (UniProt numbering)
Nonstandard amino acids
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	4-83 (4-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	GF
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	12-45 (12-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	GF
Available structure	PDB

Chain G
auth_asym_id	H
Residue indices (Uniprot)	2-64 (2-64)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-37)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain I
auth_asym_id	J
Residue indices (Uniprot)	4-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	10-46 (10-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	2-37 (2-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	M
Residue indices (Uniprot)	1-33 (1-34)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DHA7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain M
auth_asym_id	O
Residue indices (Uniprot)	4-246 (30-272)
Uniprot ID	P0A431 ￫UniprotKB
S-S bonds	19:44
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	T
Residue indices (Uniprot)	1-30 (1-30)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain O
auth_asym_id	U
Residue indices (Uniprot)	8-104 (38-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P heme
auth_asym_id	V
Residue indices (Uniprot)	1-137 (27-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	TG
Available structure	PDB

Chain Q
auth_asym_id	Y
Residue indices (Uniprot)	18-46 (18-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	X
Residue indices (Uniprot)	2-40 (2-40)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	Z
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Assembly ID: 2 (author_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	19
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others	AI (UNL ), AJ (LMT ), AK (CLA ), AL (DMS ), AM (DMS ), AN (DMS ), BI (HTG ), BJ (HTG ), BK (CLA ), BL (DMS ), BN (DMS ), CI (HTG ), CJ (UNL ), CK (CLA ), CL (DMS ), CM (LHG ), CN (DMS ), DI (UNL ), DJ (UNL ), DK (CLA ), DL (DMS ), DM (DGD ), DN (DMS ), EI (CA ), EJ (DMS ), EK (BCR ), EL (HTG ), EM (RRX ), EN (DMS ), FI (CLA ), FJ (DMS ), FK (BCR ), FL (BCT ), FM (UNL ), FN (DMS ), GH (LMT ), GI (CLA ), GJ (DMS ), GK (DGD ), GL (CLA ), GM (DMS ), GN (BCR ), HH (OEX ), HI (CLA ), HJ (DMS ), HK (DGD ), HL (CLA ), HM (UNL ), HN (LMT ), IH (FE2 ), II (CLA ), IJ (DMS ), IK (DGD ), IL (PHO ), IM (UNL ), IN (UNL ), JH (CL ), JI (CLA ), JJ (DMS ), JK (LMG ), JL (CLA ), JM (UNL ), JN (UNL ), KH (CL ), KI (CLA ), KJ (GOL ), KK (LMG ), KL (BCR ), KM (UNL ), KN (DMS ), LH (CLA ), LI (CLA ), LJ (DMS ), LK (LMT ), LL (PL9 ), LM (MG ), LN (DMS ), MH (CLA ), MI (CLA ), MJ (DMS ), MK (HTG ), ML (DGD ), MM (LMT ), MN (DMS ), NH (PHO ), NI (CLA ), NJ (DMS ), NK (HTG ), NL (LHG ), NM (UNL ), NN (CL ), OH (CLA ), OI (CLA ), OJ (HTG ), OK (UNL ), OL (LHG ), OM (UNL ), PH (BCR ), PI (CLA ), PJ (UNL ), PK (UNL ), PL (LHG ), PM (BCR ), PN (DMS ), QH (PL9 ), QI (CLA ), QJ (CA ), QK (UNL ), QL (LMG ), QM (MG ), QN (DMS ), RH (LMG ), RI (CLA ), RJ (CLA ), RK (DMS ), RL (HTG ), RM (LMT ), RN (DMS ), SH (UNL ), SI (CLA ), SJ (CLA ), SK (DMS ), SL (UNL ), SM (LMT ), SN (DMS ), TH (UNL ), TI (CLA ), TJ (CLA ), TK (DMS ), TL (DMS ), TM (LMT ), TN (DMS ), UH (UNL ), UI (CLA ), UJ (CLA ), UK (DMS ), UL (DMS ), UM (LMT ), UN (HTG ), VH (DMS ), VI (BCR ), VJ (CLA ), VK (DMS ), VL (UNL ), VM (HTG ), VN (CA ), WH (DMS ), WI (BCR ), WJ (CLA ), WK (GOL ), WL (LHG ), WM (CA ), WN (BCR ), XH (DMS ), XI (BCR ), XJ (CLA ), XK (DMS ), XL (UNL ), XM (DMS ), XN (UNL ), YH (DMS ), YI (LHG ), YJ (CLA ), YK (DMS ), YL (UNL ), YM (DMS ), YN (LMT ), ZH (DMS ), ZI (LMG ), ZJ (CLA ), ZK (DMS ), ZL (GOL ), ZM (DMS )

Each chain information

Showing all 19 chains (3 with heme). Show only chains with heme

Chain AA
auth_asym_id	i
Residue indices (Uniprot)	1-36 (1-37)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain BA
auth_asym_id	j
Residue indices (Uniprot)	1-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (10-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	l
Residue indices (Uniprot)	3-37 (2-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	m
Residue indices (Uniprot)	1-34 (1-34)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DHA7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain FA
auth_asym_id	o
Residue indices (Uniprot)	4-246 (30-272)
Uniprot ID	P0A431 ￫UniprotKB
S-S bonds	19:44
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	t
Residue indices (Uniprot)	1-30 (1-30)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain HA
auth_asym_id	u
Residue indices (Uniprot)	8-104 (38-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA heme
auth_asym_id	v
Residue indices (Uniprot)	1-137 (27-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	ON
Available structure	PDB

Chain JA
auth_asym_id	y
Residue indices (Uniprot)	18-46 (18-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	x
Residue indices (Uniprot)	2-39 (2-40)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	z
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	a
Residue indices (Uniprot)	11-344 (11-344)
Uniprot ID	P0A444 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	b
Residue indices (Uniprot)	2-505 (2-506)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	c
Residue indices (Uniprot)	19-473 (7-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	d
Residue indices (Uniprot)	11-352 (11-352)
Mutations (UniProt numbering)
Nonstandard amino acids
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X heme
auth_asym_id	e
Residue indices (Uniprot)	4-84 (4-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	BM
Available structure	PDB

Chain Y heme
auth_asym_id	f
Residue indices (Uniprot)	14-45 (12-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	BM
Available structure	PDB

Chain Z
auth_asym_id	h
Residue indices (Uniprot)	2-64 (2-64)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB