Danish

PDB ID: pdb_00006kac

Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2019-06-21

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	modeled
Oligomeric count	56
label_asym_ids of protein	56 chains (4 with heme) A, AA, AB, B, BA, BB, C, CA, CB, D, DA, DB, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA
label_asym_ids of heme	TD WJ
label_asym_ids of the others	show AC (CLA), AD (BCR), AE (CLA), AF (CHL), AG (CHL), AH (CLA), AI (CLA), AJ (CLA), AK (LMU), AL (CHL), AM (CLA), AN (CLA), BC (CLA), BD (BCR), BE (CLA), BF (CLA), BG (CHL), BH (LUT), BI (CLA), BJ (CLA), BK (LMU), BL (CHL), BM (CLA), BN (CLA), CC (CLA), CD (BCR), CE (CLA), CF (CLA), CG (CHL), CH (LUT), CI (CLA), CJ (BCR), CK (CHL), CL (CHL), CM (CLA), CN (CLA), DC (CLA), DD (DGD), DE (CHL), DF (CLA), DG (CLA), DH (XAT), DI (CLA), DJ (BCR), DK (CLA), DL (CHL), DM (CHL), DN (CLA), EB (OEX), EC (CLA), ED (DGD), EE (CHL), EF (CLA), EG (CLA), EH (NEX), EI (CLA), EJ (BCR), EK (CLA), EL (CLA), EM (CHL), EN (LUT), FB (FE2), FC (CLA), FD (DGD), FE (CHL), FF (CLA), FG (CLA), FH (LHG), FI (CLA), FJ (BCR), FK (CLA), FL (CLA), FM (CHL), FN (LUT), GB (CL), GC (CLA), GD (LMG), GE (CHL), GF (LUT), GG (CLA), GH (LMU), GI (CLA), GJ (DGD), GK (CHL), GL (CLA), GM (CLA), GN (XAT), HB (CL), HC (BCR), HD (DGD), HE (CHL), HF (LUT), HG (CLA), HH (OEX), HI (CLA), HJ (DGD), HK (CHL), HL (CLA), HM (CLA), HN (NEX), IB (CLA), IC (BCR), ID (DGD), IE (CLA), IF (XAT), IG (CLA), IH (FE2), II (CLA), IJ (DGD), IK (CHL), IL (CLA), IM (CLA), IN (LHG), JB (CLA), JC (BCR), JD (LHG), JE (CLA), JF (NEX), JG (LUT), JH (CL), JI (CLA), JJ (LMG), JK (CHL), JL (LUT), JM (CLA), JN (LMU), KB (CLA), KC (SQD), KD (BCT), KE (CLA), KF (LHG), KG (LUT), KH (CL), KI (BCR), KJ (DGD), KK (CHL), KL (LUT), KM (CLA), LB (PHO), LC (LMG), LD (CLA), LE (CLA), LF (CLA), LG (NEX), LH (CLA), LI (BCR), LJ (DGD), LK (CLA), LL (XAT), LM (CLA), MB (PHO), MC (CLA), MD (CLA), ME (CLA), MF (CLA), MG (LHG), MH (CLA), MI (BCR), MJ (LHG), MK (CLA), ML (NEX), MM (LUT), NB (CLA), NC (CLA), ND (BCR), NE (LUT), NF (CLA), NG (CHL), NH (CLA), NI (SQD), NJ (BCT), NK (CLA), NL (LHG), NM (LUT), OB (BCR), OC (CLA), OD (PL9), OE (LUT), OF (CHL), OG (CLA), OH (PHO), OI (LMG), OJ (CLA), OK (CLA), OL (CLA), OM (NEX), PB (SQD), PC (CLA), PD (LHG), PE (XAT), PF (CHL), PG (CLA), PH (PHO), PI (CLA), PJ (CLA), PK (CLA), PL (CLA), PM (LHG), QB (LMG), QC (CLA), QD (LHG), QE (NEX), QF (CHL), QG (CLA), QH (CLA), QI (CLA), QJ (BCR), QK (LUT), QL (CLA), QM (CHL), RB (CLA), RC (CLA), RD (LHG), RE (LHG), RF (CLA), RG (CHL), RH (BCR), RI (CLA), RJ (PL9), RK (LUT), RL (CHL), RM (CLA), SB (CLA), SC (CLA), SD (LMG), SE (CHL), SF (CLA), SG (CHL), SH (SQD), SI (CLA), SJ (LHG), SK (XAT), SL (CHL), SM (CLA), TB (CLA), TC (CLA), TE (CLA), TF (XAT), TG (CHL), TH (LMG), TI (CLA), TJ (LHG), TK (NEX), TL (CHL), TM (CLA), UB (CLA), UC (CLA), UD (BCR), UE (CLA), UF (NEX), UG (CHL), UH (CLA), UI (CLA), UJ (LHG), UK (LHG), UL (CLA), UM (CHL), VB (CLA), VC (CLA), VD (LMG), VE (CLA), VF (CHL), VG (CHL), VH (CLA), VI (CLA), VJ (LMG), VK (CHL), VL (CLA), VM (CHL), WB (CLA), WC (CLA), WD (LHG), WE (CHL), WF (CLA), WG (CLA), WH (CLA), WI (CLA), WK (CLA), WL (XAT), WM (CHL), XB (CLA), XC (CLA), XD (LMU), XE (CHL), XF (CLA), XG (CLA), XH (CLA), XI (CLA), XJ (BCR), XK (CLA), XL (NEX), XM (CHL), YB (CLA), YC (CLA), YD (LMU), YE (CHL), YF (CLA), YG (CLA), YH (CLA), YI (CLA), YJ (LMG), YK (CLA), YL (CHL), YM (CHL), ZB (CLA), ZC (BCR), ZD (CHL), ZE (CHL), ZF (CLA), ZG (CLA), ZH (CLA), ZI (CLA), ZJ (LHG), ZK (CHL), ZL (CLA), ZM (CLA)

Each chain information

Showing all 56 chains (4 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	9-344 (1-352)
Uniprot ID	P07753 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA
auth_asym_id	1
Residue indices (Uniprot)	111-135 (-)
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain AB
auth_asym_id	y
Residue indices (Uniprot)	36-256 (1-256)
Uniprot ID	Q93VE0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-491 (1-508)
Uniprot ID	P37255 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	4
Residue indices (Uniprot)	64-88 (-)
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain BB
auth_asym_id	u
Residue indices (Uniprot)	91-114 (1-178)
Uniprot ID	A8I5A0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	V
Residue indices (Uniprot)	2-33 (1-33)
Uniprot ID	P50370 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	a
Residue indices (Uniprot)	9-344 (1-352)
Uniprot ID	P07753 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CB
auth_asym_id	0
Residue indices (Uniprot)	111-135 (-)
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	C
Residue indices (Uniprot)	13-461 (1-461)
Uniprot ID	P10898 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	b
Residue indices (Uniprot)	2-491 (1-508)
Uniprot ID	P37255 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DB
auth_asym_id	3
Residue indices (Uniprot)	64-88 (-)
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain E
auth_asym_id	D
Residue indices (Uniprot)	5-352 (1-352)
Uniprot ID	P06007 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	v
Residue indices (Uniprot)	2-33 (1-33)
Uniprot ID	P50370 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	E
Residue indices (Uniprot)	7-82 (1-82)
Uniprot ID	P48268 ￫UniprotKB
label_asym_ids of heme	TD
Available structure	PDB

Chain FA
auth_asym_id	c
Residue indices (Uniprot)	13-461 (1-461)
Uniprot ID	P10898 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G heme
auth_asym_id	F
Residue indices (Uniprot)	14-44 (1-44)
Uniprot ID	Q08363 ￫UniprotKB
label_asym_ids of heme	TD
Available structure	PDB

Chain GA
auth_asym_id	d
Residue indices (Uniprot)	5-352 (1-352)
Uniprot ID	P06007 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	H
Residue indices (Uniprot)	19-86 (1-88)
Uniprot ID	P22666 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA heme
auth_asym_id	e
Residue indices (Uniprot)	7-82 (1-82)
Uniprot ID	P48268 ￫UniprotKB
label_asym_ids of heme	WJ
Available structure	PDB

Chain I
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-37)
Uniprot ID	P59763 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA heme
auth_asym_id	f
Residue indices (Uniprot)	14-44 (1-44)
Uniprot ID	Q08363 ￫UniprotKB
label_asym_ids of heme	WJ
Available structure	PDB

Chain J
auth_asym_id	J
Residue indices (Uniprot)	7-42 (1-42)
Uniprot ID	O19930 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	h
Residue indices (Uniprot)	19-86 (1-88)
Uniprot ID	P22666 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	K
Residue indices (Uniprot)	10-46 (1-46)
Uniprot ID	P18263 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	i
Residue indices (Uniprot)	1-35 (1-37)
Uniprot ID	P59763 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	L
Residue indices (Uniprot)	4-38 (1-38)
Uniprot ID	P32974 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	j
Residue indices (Uniprot)	7-42 (1-42)
Uniprot ID	O19930 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	M
Residue indices (Uniprot)	3-32 (1-34)
Uniprot ID	P92277 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain MA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (1-46)
Uniprot ID	P18263 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	O
Residue indices (Uniprot)	52-291 (1-291)
Uniprot ID	P12853 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain NA
auth_asym_id	l
Residue indices (Uniprot)	4-38 (1-38)
Uniprot ID	P32974 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	P
Residue indices (Uniprot)	58-245 (1-245)
Uniprot ID	P11471 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain OA
auth_asym_id	m
Residue indices (Uniprot)	3-32 (1-34)
Uniprot ID	P92277 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	Q
Residue indices (Uniprot)	52-199 (1-199)
Uniprot ID	P12852 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain PA
auth_asym_id	o
Residue indices (Uniprot)	52-291 (1-291)
Uniprot ID	P12853 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	T
Residue indices (Uniprot)	1-30 (1-31)
Uniprot ID	P37256 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain QA
auth_asym_id	p
Residue indices (Uniprot)	58-245 (1-245)
Uniprot ID	P11471 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	W
Residue indices (Uniprot)	60-115 (1-115)
Uniprot ID	Q9SPI9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain RA
auth_asym_id	q
Residue indices (Uniprot)	52-199 (1-199)
Uniprot ID	P12852 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	X
Residue indices (Uniprot)	64-98 (1-101)
Uniprot ID	A8I846 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain SA
auth_asym_id	t
Residue indices (Uniprot)	1-30 (1-31)
Uniprot ID	P37256 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	Z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	P92276 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain TA
auth_asym_id	w
Residue indices (Uniprot)	60-115 (1-115)
Uniprot ID	Q9SPI9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	N
Residue indices (Uniprot)	39-257 (1-257)
Uniprot ID	Q93WL4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain UA
auth_asym_id	x
Residue indices (Uniprot)	64-98 (1-101)
Uniprot ID	A8I846 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	G
Residue indices (Uniprot)	31-249 (1-249)
Uniprot ID	Q93WE0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain VA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	P92276 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	R
Residue indices (Uniprot)	59-259 (1-280)
Missing residues	111THR-128PHE
Structural gaps	Exists
Uniprot ID	Q93WD2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.22 Å

Chain WA
auth_asym_id	n
Residue indices (Uniprot)	39-257 (1-257)
Uniprot ID	Q93WL4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	S
Residue indices (Uniprot)	34-285 (1-289)
Uniprot ID	Q9FEK6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain XA
auth_asym_id	g
Residue indices (Uniprot)	31-249 (1-249)
Uniprot ID	Q93WE0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	Y
Residue indices (Uniprot)	36-256 (1-256)
Uniprot ID	Q93VE0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain YA
auth_asym_id	r
Residue indices (Uniprot)	59-259 (1-280)
Missing residues	111THR-128PHE
Structural gaps	Exists
Uniprot ID	Q93WD2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.28 Å

Chain Z
auth_asym_id	U
Residue indices (Uniprot)	91-114 (1-178)
Uniprot ID	A8I5A0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain ZA
auth_asym_id	s
Residue indices (Uniprot)	34-285 (1-289)
Uniprot ID	Q9FEK6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB