Danish
PDB ID:  pdb_00006v0a
  • Crystal structure of cytochrome c nitrite reductase from the bacterium Geobacter lovleyi with bound sulfate
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • Deposition date: 2019-11-18
Number of assemblies:  3
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others L (SO4Structure of SO4SO4 ), R (SO4Structure of SO4SO4 )
Each chain information
Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 35-480 (1-482)
Missing residues 203LYS-203LYS:306LYS-306LYS:326LYS-326LYS
Structural gaps Exists
Uniprot ID B3E641 ￫UniprotKB
label_asym_ids of heme K ,  J ,  I ,  H ,  G
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 35-479 (1-482)
Missing residues 307VAL-307VAL
Structural gaps Exists
Uniprot ID B3E641 ￫UniprotKB
label_asym_ids of heme Q ,  P ,  O ,  N ,  M
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Assembly ID:  2  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others DA (SO4Structure of SO4SO4 ), X (SO4Structure of SO4SO4 )
Each chain information
Chain C heme  
auth_asym_id C
Residue indices (Uniprot) 35-478 (1-482)
Missing residues 162LYS-162LYS:307VAL-307VAL
Structural gaps Exists
Uniprot ID B3E641 ￫UniprotKB
label_asym_ids of heme W ,  V ,  U ,  T ,  S
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain D heme  
auth_asym_id D
Residue indices (Uniprot) 35-480 (1-482)
Missing residues 47LYS-47LYS:310LYS-310LYS
Structural gaps Exists
Uniprot ID B3E641 ￫UniprotKB
label_asym_ids of heme CA ,  BA ,  AA ,  Z ,  Y
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Assembly ID:  3  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others JA (SO4Structure of SO4SO4 ), PA (SO4Structure of SO4SO4 )
Each chain information
Chain E heme  
auth_asym_id E
Residue indices (Uniprot) 35-480 (1-482)
Missing residues 78LYS-78LYS:310LYS-310LYS:456LYS-456LYS
Structural gaps Exists
Uniprot ID B3E641 ￫UniprotKB
label_asym_ids of heme IA ,  HA ,  GA ,  FA ,  EA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain F heme  
auth_asym_id F
Residue indices (Uniprot) 35-478 (1-482)
Missing residues 162LYS-162LYS:203LYS-203LYS:310LYS-310LYS
Structural gaps Exists
Uniprot ID B3E641 ￫UniprotKB
label_asym_ids of heme OA ,  NA ,  MA ,  LA ,  KA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å