Danish
PDB ID:  pdb_00007b04
  • Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • Deposition date: 2020-11-18
Number of assemblies:  8
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (SF4Structure of SF4SF4 ), BA (F3SStructure of F3SF3S ), CA (MD1Structure of MD1MD1 ), DA (MD1Structure of MD1MD1 ), EA (MOStructure of MOMO ), FA (SF4Structure of SF4SF4 ), HA (CAStructure of CACA ), IA (CAStructure of CACA ), Y (SF4Structure of SF4SF4 ), Z (SF4Structure of SF4SF4 )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain A  
auth_asym_id A
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain B  
auth_asym_id B
Residue indices (Uniprot) 28-1147 (1-1148)
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C heme  
auth_asym_id C
Residue indices (Uniprot) 31-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme GA
Available structure PDB
Assembly ID:  2  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others JA (SF4Structure of SF4SF4 ), KA (SF4Structure of SF4SF4 ), LA (SF4Structure of SF4SF4 ), MA (F3SStructure of F3SF3S ), NA (MD1Structure of MD1MD1 ), OA (MD1Structure of MD1MD1 ), PA (MOStructure of MOMO ), QA (SF4Structure of SF4SF4 ), SA (CAStructure of CACA ), TA (CAStructure of CACA )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain D  
auth_asym_id D
Residue indices (Uniprot) 2-409 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 32-1147 (1-1148)
Missing residues 232GLY-232GLY:435ASP-436ALA:480THR-481LEU
Structural gaps Exists
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.43 Å
Chain F heme  
auth_asym_id F
Residue indices (Uniprot) 31-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme RA
Available structure PDB
Assembly ID:  3  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (MOStructure of MOMO ), BB (SF4Structure of SF4SF4 ), DB (CAStructure of CACA ), EB (CAStructure of CACA ), UA (SF4Structure of SF4SF4 ), VA (SF4Structure of SF4SF4 ), WA (SF4Structure of SF4SF4 ), XA (F3SStructure of F3SF3S ), YA (MD1Structure of MD1MD1 ), ZA (MD1Structure of MD1MD1 )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain G  
auth_asym_id G
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id H
Residue indices (Uniprot) 30-1147 (1-1148)
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I heme  
auth_asym_id I
Residue indices (Uniprot) 31-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme CB
Available structure PDB
Assembly ID:  4  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others FB (SF4Structure of SF4SF4 ), GB (SF4Structure of SF4SF4 ), HB (SF4Structure of SF4SF4 ), IB (F3SStructure of F3SF3S ), JB (MD1Structure of MD1MD1 ), KB (MD1Structure of MD1MD1 ), LB (MOStructure of MOMO ), MB (SF4Structure of SF4SF4 ), OB (CAStructure of CACA ), PB (CAStructure of CACA )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain J  
auth_asym_id J
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id K
Residue indices (Uniprot) 29-1147 (1-1148)
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L heme  
auth_asym_id L
Residue indices (Uniprot) 31-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme NB
Available structure PDB
Assembly ID:  5  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AC (CAStructure of CACA ), QB (SF4Structure of SF4SF4 ), RB (SF4Structure of SF4SF4 ), SB (SF4Structure of SF4SF4 ), TB (F3SStructure of F3SF3S ), UB (MD1Structure of MD1MD1 ), VB (MD1Structure of MD1MD1 ), WB (MOStructure of MOMO ), XB (SF4Structure of SF4SF4 ), ZB (CAStructure of CACA )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain M  
auth_asym_id M
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N  
auth_asym_id N
Residue indices (Uniprot) 31-1147 (1-1148)
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain O heme  
auth_asym_id O
Residue indices (Uniprot) 32-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme YB
Available structure PDB
Assembly ID:  6  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others BC (SF4Structure of SF4SF4 ), CC (SF4Structure of SF4SF4 ), DC (SF4Structure of SF4SF4 ), EC (F3SStructure of F3SF3S ), FC (MD1Structure of MD1MD1 ), GC (MD1Structure of MD1MD1 ), HC (MOStructure of MOMO ), IC (SF4Structure of SF4SF4 ), KC (CAStructure of CACA ), LC (CAStructure of CACA )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain P  
auth_asym_id P
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 29-1147 (1-1148)
Missing residues 435ASP-437LYS
Structural gaps Exists
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.15 Å
Chain R heme  
auth_asym_id R
Residue indices (Uniprot) 32-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme JC
Available structure PDB
Assembly ID:  7  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others MC (SF4Structure of SF4SF4 ), NC (SF4Structure of SF4SF4 ), OC (SF4Structure of SF4SF4 ), PC (F3SStructure of F3SF3S ), QC (MD1Structure of MD1MD1 ), RC (MD1Structure of MD1MD1 ), SC (MOStructure of MOMO ), TC (SF4Structure of SF4SF4 ), VC (CAStructure of CACA ), WC (CAStructure of CACA )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain S  
auth_asym_id S
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id T
Residue indices (Uniprot) 29-1147 (1-1148)
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain U heme  
auth_asym_id U
Residue indices (Uniprot) 31-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme UC
Available structure PDB
Assembly ID:  8  (author_and_software_defined_assembly)    
Structural data PDB
Oligomeric count 3
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AD (F3SStructure of F3SF3S ), BD (MD1Structure of MD1MD1 ), CD (MD1Structure of MD1MD1 ), DD (MOStructure of MOMO ), ED (SF4Structure of SF4SF4 ), GD (CAStructure of CACA ), HD (CAStructure of CACA ), XC (SF4Structure of SF4SF4 ), YC (SF4Structure of SF4SF4 ), ZC (SF4Structure of SF4SF4 )
Each chain information

Showing all 3 chains (1 with heme). Show only chains with heme

Chain V  
auth_asym_id V
Residue indices (Uniprot) 2-410 (1-410)
Uniprot ID Q1PZD5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id W
Residue indices (Uniprot) 30-1147 (1-1148)
Uniprot ID Q1PZD8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X heme  
auth_asym_id X
Residue indices (Uniprot) 31-322 (1-322)
Uniprot ID Q1PZD4 ￫UniprotKB
label_asym_ids of heme FD
Available structure PDB