PDB ID: pdb_00007oih
- Glycosylation in the crystal structure of neutrophil myeloperoxidase
- Experimental method: X-RAY DIFFRACTION
- Resolution: 2.603 Å
- Deposition date: 2021-05-11
Number of assemblies: 4
| Structural data | modeled |
|---|---|
| Oligomeric count | 2 |
| label_asym_ids of protein | |
| label_asym_ids of heme | |
| label_asym_ids of the others |
AB (CL  CL
), BB (CLCL
), CB (PO4 PO4
), DB (PO4PO4
), GA (NAG NAG
), HA (CLCL
), I (NAGNAG
, BMA BMA
), IA (CLCL
), JA (CLCL
), KA (CA CA
), M (NAGNAG
, BMABMA
, MAN MAN
), MA (SCN SCN
), N (NAGNAG
, BMABMA
, MANMAN
, FUC FUC
), NA (8PR 8PR
), O (NAGNAG
), OA (CLCL
), P (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), PA (CLCL
), QA (PO4PO4
), RA (CLCL
), SA (CLCL
), TA (CLCL
), UA (CACA
), VA (NAGNAG
), WA (NAGNAG
), YA (SCNSCN
), ZA (SCNSCN
)
|
Each chain information
| auth_asym_id | A |
|---|---|
| Residue indices (Uniprot) | 166-744 (166-744) |
| Missing residues | 273ALA-278GLY:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
 CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | LA |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.10 Å |
| auth_asym_id | B |
|---|---|
| Residue indices (Uniprot) | 166-744 (166-744) |
| Missing residues | 270ALA-278GLY:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | XA |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.11 Å |
| Structural data | modeled |
|---|---|
| Oligomeric count | 2 |
| label_asym_ids of protein | |
| label_asym_ids of heme | |
| label_asym_ids of the others |
AC (PO4PO4
), BC (PO4PO4
), EB (CLCL
), FB (CLCL
), GB (CACA
), HB (NAGNAG
), IB (NAGNAG
), J (NAGNAG
, BMABMA
), KB (SCNSCN
), LB (CLCL
), MB (CLCL
), NB (PO4PO4
), OB (PO4PO4
), PB (SCNSCN
), Q (NAGNAG
), QB (CLCL
), R (NAGNAG
, BMABMA
, MANMAN
), RB (CACA
), S (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), SB (NAGNAG
), T (NAGNAG
, BMABMA
, MANMAN
), U (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), UB (SCNSCN
), VB (8PR8PR
), WB (CLCL
), XB (CLCL
), YB (CLCL
), ZB (PO4PO4
)
|
Each chain information
| auth_asym_id | C |
|---|---|
| Residue indices (Uniprot) | 166-744 (166-744) |
| Missing residues | 271ALA-279VAL:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | JB |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.10 Å |
| auth_asym_id | D |
|---|---|
| Residue indices (Uniprot) | 167-744 (166-744) |
| Missing residues | 272ARG-278GLY:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | TB |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.10 Å |
| Structural data | modeled |
|---|---|
| Oligomeric count | 2 |
| label_asym_ids of protein | |
| label_asym_ids of heme | |
| label_asym_ids of the others |
AA (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), CC (CLCL
), DC (CLCL
), EC (CLCL
), FC (CACA
), HC (SCNSCN
), IC (CLCL
), JC (PO4PO4
), KC (CLCL
), LC (CLCL
), MC (CACA
), NC (CLCL
), PC (SCNSCN
), QC (8PR8PR
), RC (CLCL
), SC (CLCL
), TC (PO4PO4
), V (NAGNAG
, BMABMA
, MANMAN
), W (NAGNAG
), X (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), Y (NAGNAG
, BMABMA
, MANMAN
), Z (NAGNAG
, BMABMA
)
|
Each chain information
| auth_asym_id | E |
|---|---|
| Residue indices (Uniprot) | 166-744 (166-744) |
| Missing residues | 272ARG-278GLY:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | GC |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.09 Å |
| auth_asym_id | F |
|---|---|
| Residue indices (Uniprot) | 166-744 (166-744) |
| Missing residues | 272ARG-279VAL:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | OC |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.09 Å |
| Structural data | modeled |
|---|---|
| Oligomeric count | 2 |
| label_asym_ids of protein | |
| label_asym_ids of heme | |
| label_asym_ids of the others |
AD (SCNSCN
), BA (NAGNAG
, BMABMA
, MANMAN
), BD (CLCL
), CA (NAGNAG
, BMABMA
), CD (PO4PO4
), DA (NAGNAG
), DD (PO4PO4
), EA (NAGNAG
, BMABMA
), ED (CLCL
), FA (NAGNAG
), FD (CLCL
), GD (CLCL
), HD (CACA
), JD (SCNSCN
), K (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), KD (8PR8PR
), L (NAGNAG
, BMABMA
, MANMAN
, FUCFUC
), LD (CLCL
), MD (PO4PO4
), ND (PO4PO4
), UC (CLCL
), VC (CLCL
), WC (CLCL
), XC (CLCL
), YC (CACA
)
|
Each chain information
| auth_asym_id | G |
|---|---|
| Residue indices (Uniprot) | 167-744 (166-744) |
| Missing residues | 271ALA-279VAL:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | ZC |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.11 Å |
| auth_asym_id | H |
|---|---|
| Residue indices (Uniprot) | 167-744 (166-744) |
| Missing residues | 272ARG-278GLY:316CYS-316CYS |
| Structural gaps | Exists |
| Nonstandard amino acids |
CSO
|
| Uniprot ID | P05164 ￫UniprotKB |
| S-S bonds | 167:180,281:291,285:309,387:398,606:663,704:730 |
| label_asym_ids of heme | ID |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.09 Å |