Danish
PDB ID:  pdb_00007xxf
  • Structure of photosynthetic LH1-RC super-complex of Rhodopila globiformis
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2022-05-30
Number of assemblies:  1
Assembly ID:  0  (author_defined_assembly)    
Structural data modeled
Oligomeric count 47
label_asym_ids of protein
47 chains (1 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, W, X, Y, Z
label_asym_ids of heme VA WA XA YA
label_asym_ids of the others
show AB (PGV), AC (PGV), AD (I7D), AE (PGV), BB (PGV), BC (PGV), BD (BCL), BE (BCL), CB (BCL), CC (CDL), CD (I7D), CE (PGV), DB (BPH), DC (CDL), DD (BCL), DE (PGV), EB (U10), EC (BCL), ED (BCL), EE (CDL), FB (PGV), FC (I7D), FD (I7D), FE (I7D), GB (PGV), GC (BCL), GD (BCL), GE (BCL), HB (U10), HC (I7D), HD (CDL), HE (CDL), IB (U10), IC (BCL), ID (BCL), IE (U10), JB (LMT), JC (PGV), JD (I7D), JE (BCL), KB (BCL), KC (I7D), KD (BCL), KE (I7D), LB (PGV), LC (BCL), LD (BCL), LE (BCL), MB (PGV), MC (BCL), MD (I7D), ME (BCL), NB (PGV), NC (PGV), ND (BCL), NE (CDL), OB (LMT), OC (BCL), OD (BCL), OE (BCL), PB (FE), PC (I7D), PD (BCL), QB (BCL), QC (BCL), QD (I7D), RB (BCL), RC (LMT), RD (BCL), SB (BPH), SC (BCL), SD (LMT), TB (MQ9), TC (I7D), TD (CDL), UB (I7D), UC (BCL), UD (BCL), VB (CDL), VC (PGV), VD (I7D), WB (CDL), WC (I7D), WD (BCL), XB (PEE), XC (BCL), XD (LMT), YB (PGV), YC (BCL), YD (I7D), ZA (PGV), ZB (PGV), ZC (BCL), ZD (BCL)
Each chain information

Showing all 47 chains (1 with heme). Show only chains with heme

Chain A heme  
auth_asym_id C
Residue indices (Uniprot) 1-343 (1-344)
Uniprot ID A0A2S6NEK5 ￫UniprotKB
label_asym_ids of heme YA ,  XA ,  WA ,  VA
Available structure PDB
Chain AA  
auth_asym_id 1
Residue indices (Uniprot) 1-46 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.15 Å
Chain B  
auth_asym_id L
Residue indices (Uniprot) 2-275 (1-275)
Uniprot ID A0A2S6NEG7 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BA  
auth_asym_id 2
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id M
Residue indices (Uniprot) 2-321 (1-326)
Uniprot ID A0A2S6NEP5 ￫UniprotKB
S-S bonds 170:172
label_asym_ids of heme None
Available structure PDB
Chain CA  
auth_asym_id 3
Residue indices (Uniprot) 1-61 (1-61)
Missing residues 1MET-1MET:46ARG-49VAL
Structural gaps Exists
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.16 Å
Chain D  
auth_asym_id H
Residue indices (Uniprot) 1-258 (1-258)
Uniprot ID A0A2S6MZS1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain DA  
auth_asym_id 4
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id A
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain EA  
auth_asym_id 5
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain F  
auth_asym_id B
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain FA  
auth_asym_id 6
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id D
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain GA  
auth_asym_id 7
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain H  
auth_asym_id E
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain HA  
auth_asym_id 8
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id F
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain IA  
auth_asym_id 9
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain J  
auth_asym_id G
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain JA  
auth_asym_id 0
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id I
Residue indices (Uniprot) 1-46 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain KA  
auth_asym_id a
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain L  
auth_asym_id J
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain LA  
auth_asym_id b
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain M  
auth_asym_id K
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain MA  
auth_asym_id c
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain N  
auth_asym_id N
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain NA  
auth_asym_id d
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain O  
auth_asym_id O
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain OA  
auth_asym_id e
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain P  
auth_asym_id P
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain PA  
auth_asym_id f
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain QA  
auth_asym_id g
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain R  
auth_asym_id R
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain RA  
auth_asym_id h
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain S  
auth_asym_id S
Residue indices (Uniprot) 1-58 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain SA  
auth_asym_id i
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain T  
auth_asym_id T
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain TA  
auth_asym_id j
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain U  
auth_asym_id U
Residue indices (Uniprot) 1-53 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain UA  
auth_asym_id k
Residue indices (Uniprot) 1-22 (-)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain V  
auth_asym_id V
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id W
Residue indices (Uniprot) 1-57 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain X  
auth_asym_id X
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id Y
Residue indices (Uniprot) 1-45 (1-61)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A0A2S6NEK3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain Z  
auth_asym_id Z
Residue indices (Uniprot) 7-56 (1-73)
Uniprot ID A0A2S6NEL9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB