PDB ID:  pdb_00007y44
  • Re-refinement of damage free X-ray structure of bovine cytochrome c oxidase at 1.9 angstrom resolution
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • Deposition date: 2022-06-14
Number of assemblies:  2
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (CHDStructure of CHDCHD ), AC (DMUStructure of DMUDMU ), BB (CHDStructure of CHDCHD ), BC (DMUStructure of DMUDMU ), CA (CUStructure of CUCU ), CB (PEKStructure of PEKPEK ), CC (TGLStructure of TGLTGL ), DA (MGStructure of MGMG ), DB (PGVStructure of PGVPGV ), DC (DMUStructure of DMUDMU ), EA (NAStructure of NANA ), EB (PEKStructure of PEKPEK ), EC (CHDStructure of CHDCHD ), FA (PERStructure of PERPER ), FB (EDOStructure of EDOEDO ), FC (EDOStructure of EDOEDO ), GA (PGVStructure of PGVPGV ), GB (EDOStructure of EDOEDO ), GC (EDOStructure of EDOEDO ), HA (PGVStructure of PGVPGV ), HB (DMUStructure of DMUDMU ), HC (DMUStructure of DMUDMU ), IA (EDOStructure of EDOEDO ), IB (TGLStructure of TGLTGL ), IC (EDOStructure of EDOEDO ), JA (EDOStructure of EDOEDO ), JB (DMUStructure of DMUDMU ), KA (EDOStructure of EDOEDO ), KB (ZNStructure of ZNZN ), LA (EDOStructure of EDOEDO ), LB (EDOStructure of EDOEDO ), MA (EDOStructure of EDOEDO ), MB (EDOStructure of EDOEDO ), NA (EDOStructure of EDOEDO ), NB (EDOStructure of EDOEDO ), OA (EDOStructure of EDOEDO ), OB (EDOStructure of EDOEDO ), PA (DMUStructure of DMUDMU ), PB (CDLStructure of CDLCDL ), QA (TGLStructure of TGLTGL ), QB (PEKStructure of PEKPEK ), RA (CUAStructure of CUACUA ), RB (CHDStructure of CHDCHD ), SA (PSCStructure of PSCPSC ), SB (DMUStructure of DMUDMU ), TA (EDOStructure of EDOEDO ), TB (EDOStructure of EDOEDO ), UA (EDOStructure of EDOEDO ), UB (PO4Structure of PO4PO4 ), VA (DMUStructure of DMUDMU ), VB (CHDStructure of CHDCHD ), WA (NAStructure of NANA ), WB (DMUStructure of DMUDMU ), XA (PEKStructure of PEKPEK ), XB (DMUStructure of DMUDMU ), YA (PGVStructure of PGVPGV ), YB (DMUStructure of DMUDMU ), ZA (CDLStructure of CDLCDL ), ZB (DMUStructure of DMUDMU )
Each chain information

Showing 1 chain with heme of 13. Show all chains

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme BA ,  AA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AD (EDOStructure of EDOEDO ), AE (DMUStructure of DMUDMU ), BD (EDOStructure of EDOEDO ), BE (EDOStructure of EDOEDO ), CD (EDOStructure of EDOEDO ), CE (ZNStructure of ZNZN ), DD (TGLStructure of TGLTGL ), DE (EDOStructure of EDOEDO ), ED (CUAStructure of CUACUA ), EE (EDOStructure of EDOEDO ), FD (EDOStructure of EDOEDO ), FE (EDOStructure of EDOEDO ), GD (EDOStructure of EDOEDO ), GE (EDOStructure of EDOEDO ), HD (DMUStructure of DMUDMU ), HE (EDOStructure of EDOEDO ), ID (PGVStructure of PGVPGV ), IE (EDOStructure of EDOEDO ), JD (PGVStructure of PGVPGV ), JE (CHDStructure of CHDCHD ), KD (NAStructure of NANA ), KE (CDLStructure of CDLCDL ), LC (CUStructure of CUCU ), LD (PEKStructure of PEKPEK ), LE (DMUStructure of DMUDMU ), MC (MGStructure of MGMG ), MD (PGVStructure of PGVPGV ), ME (PO4Structure of PO4PO4 ), NC (NAStructure of NANA ), ND (CDLStructure of CDLCDL ), NE (CHDStructure of CHDCHD ), OC (PERStructure of PERPER ), OD (CHDStructure of CHDCHD ), OE (EDOStructure of EDOEDO ), PC (PGVStructure of PGVPGV ), PD (CHDStructure of CHDCHD ), PE (EDOStructure of EDOEDO ), QC (PSCStructure of PSCPSC ), QD (PEKStructure of PEKPEK ), QE (DMUStructure of DMUDMU ), RC (EDOStructure of EDOEDO ), RD (EDOStructure of EDOEDO ), RE (DMUStructure of DMUDMU ), SC (EDOStructure of EDOEDO ), SD (EDOStructure of EDOEDO ), SE (DMUStructure of DMUDMU ), TC (EDOStructure of EDOEDO ), TD (EDOStructure of EDOEDO ), TE (DMUStructure of DMUDMU ), UC (EDOStructure of EDOEDO ), UD (EDOStructure of EDOEDO ), UE (CHDStructure of CHDCHD ), VC (EDOStructure of EDOEDO ), VD (DMUStructure of DMUDMU ), VE (TGLStructure of TGLTGL ), WC (EDOStructure of EDOEDO ), WD (EDOStructure of EDOEDO ), WE (CHDStructure of CHDCHD ), XC (EDOStructure of EDOEDO ), XD (DMUStructure of DMUDMU ), XE (EDOStructure of EDOEDO ), YC (EDOStructure of EDOEDO ), YD (TGLStructure of TGLTGL ), YE (DMUStructure of DMUDMU ), ZC (EDOStructure of EDOEDO ), ZD (EDOStructure of EDOEDO )
Each chain information

Showing 1 chain with heme of 13. Show all chains

Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme KC ,  JC
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å