PDB ID:  pdb_00007ypy
  • Bovine heart cytochrome c oxidase in fully oxidized state at 1.5 angstrom resolution
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • Deposition date: 2022-08-05
Number of assemblies:  2
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (EDOStructure of EDOEDO ), AC (DMUStructure of DMUDMU ), AD (DMUStructure of DMUDMU ), BB (DMUStructure of DMUDMU ), BC (DMUStructure of DMUDMU ), BD (EDOStructure of EDOEDO ), CA (CUStructure of CUCU ), CB (TGLStructure of TGLTGL ), CC (DMUStructure of DMUDMU ), CD (EDOStructure of EDOEDO ), DA (MGStructure of MGMG ), DB (CUAStructure of CUACUA ), DC (TGLStructure of TGLTGL ), DD (EDOStructure of EDOEDO ), EA (NAStructure of NANA ), EB (CHDStructure of CHDCHD ), EC (EDOStructure of EDOEDO ), ED (EDOStructure of EDOEDO ), FA (PERStructure of PERPER ), FB (PSCStructure of PSCPSC ), FC (EDOStructure of EDOEDO ), FD (EDOStructure of EDOEDO ), GA (PGVStructure of PGVPGV ), GB (EDOStructure of EDOEDO ), GC (EDOStructure of EDOEDO ), GD (DMUStructure of DMUDMU ), HA (PGVStructure of PGVPGV ), HB (EDOStructure of EDOEDO ), HC (EDOStructure of EDOEDO ), HD (DMUStructure of DMUDMU ), IA (TGLStructure of TGLTGL ), IB (EDOStructure of EDOEDO ), IC (DMUStructure of DMUDMU ), ID (DMUStructure of DMUDMU ), JA (EDOStructure of EDOEDO ), JB (EDOStructure of EDOEDO ), JC (EDOStructure of EDOEDO ), JD (DMUStructure of DMUDMU ), KA (EDOStructure of EDOEDO ), KB (EDOStructure of EDOEDO ), KC (EDOStructure of EDOEDO ), KD (DMUStructure of DMUDMU ), LA (EDOStructure of EDOEDO ), LB (PGVStructure of PGVPGV ), LC (EDOStructure of EDOEDO ), LD (DMUStructure of DMUDMU ), MA (EDOStructure of EDOEDO ), MB (CDLStructure of CDLCDL ), MC (ZNStructure of ZNZN ), MD (EDOStructure of EDOEDO ), NA (EDOStructure of EDOEDO ), NB (CHDStructure of CHDCHD ), NC (EDOStructure of EDOEDO ), ND (EDOStructure of EDOEDO ), OA (EDOStructure of EDOEDO ), OB (CHDStructure of CHDCHD ), OC (EDOStructure of EDOEDO ), OD (EDOStructure of EDOEDO ), PA (EDOStructure of EDOEDO ), PB (PEKStructure of PEKPEK ), PC (EDOStructure of EDOEDO ), PD (CHDStructure of CHDCHD ), QA (EDOStructure of EDOEDO ), QB (PGVStructure of PGVPGV ), QC (EDOStructure of EDOEDO ), QD (DMUStructure of DMUDMU ), RA (EDOStructure of EDOEDO ), RB (PEKStructure of PEKPEK ), RC (EDOStructure of EDOEDO ), RD (DMUStructure of DMUDMU ), SA (EDOStructure of EDOEDO ), SB (DMUStructure of DMUDMU ), SC (EDOStructure of EDOEDO ), SD (EDOStructure of EDOEDO ), TA (EDOStructure of EDOEDO ), TB (PEKStructure of PEKPEK ), TC (CDLStructure of CDLCDL ), TD (EDOStructure of EDOEDO ), UA (EDOStructure of EDOEDO ), UB (EDOStructure of EDOEDO ), UC (PGVStructure of PGVPGV ), VA (EDOStructure of EDOEDO ), VB (EDOStructure of EDOEDO ), VC (EDOStructure of EDOEDO ), WA (EDOStructure of EDOEDO ), WB (EDOStructure of EDOEDO ), WC (EDOStructure of EDOEDO ), XA (EDOStructure of EDOEDO ), XB (EDOStructure of EDOEDO ), XC (EDOStructure of EDOEDO ), YA (EDOStructure of EDOEDO ), YB (EDOStructure of EDOEDO ), YC (EDOStructure of EDOEDO ), ZA (EDOStructure of EDOEDO ), ZB (EDOStructure of EDOEDO ), ZC (PO4Structure of PO4PO4 )
Each chain information

Showing 1 chain with heme of 13. Show all chains

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme AA ,  BA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 13
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AE (PGVStructure of PGVPGV ), AF (PGVStructure of PGVPGV ), AG (EDOStructure of EDOEDO ), BE (EDOStructure of EDOEDO ), BF (CDLStructure of CDLCDL ), BG (EDOStructure of EDOEDO ), CE (EDOStructure of EDOEDO ), CF (CHDStructure of CHDCHD ), CG (PEKStructure of PEKPEK ), DE (EDOStructure of EDOEDO ), DF (DMUStructure of DMUDMU ), DG (CDLStructure of CDLCDL ), EE (EDOStructure of EDOEDO ), EF (CHDStructure of CHDCHD ), EG (EDOStructure of EDOEDO ), FE (EDOStructure of EDOEDO ), FF (PEKStructure of PEKPEK ), FG (EDOStructure of EDOEDO ), GE (EDOStructure of EDOEDO ), GF (EDOStructure of EDOEDO ), GG (EDOStructure of EDOEDO ), HE (EDOStructure of EDOEDO ), HF (EDOStructure of EDOEDO ), HG (EDOStructure of EDOEDO ), IE (EDOStructure of EDOEDO ), IF (EDOStructure of EDOEDO ), IG (PO4Structure of PO4PO4 ), JE (EDOStructure of EDOEDO ), JF (EDOStructure of EDOEDO ), JG (EDOStructure of EDOEDO ), KE (EDOStructure of EDOEDO ), KF (EDOStructure of EDOEDO ), KG (EDOStructure of EDOEDO ), LE (EDOStructure of EDOEDO ), LF (EDOStructure of EDOEDO ), LG (CHDStructure of CHDCHD ), ME (EDOStructure of EDOEDO ), MF (DMUStructure of DMUDMU ), MG (DMUStructure of DMUDMU ), NE (EDOStructure of EDOEDO ), NF (DMUStructure of DMUDMU ), NG (DMUStructure of DMUDMU ), OE (EDOStructure of EDOEDO ), OF (PGVStructure of PGVPGV ), OG (DMUStructure of DMUDMU ), PE (EDOStructure of EDOEDO ), PF (TGLStructure of TGLTGL ), PG (DMUStructure of DMUDMU ), QE (EDOStructure of EDOEDO ), QF (EDOStructure of EDOEDO ), QG (DMUStructure of DMUDMU ), RE (EDOStructure of EDOEDO ), RF (EDOStructure of EDOEDO ), RG (DMUStructure of DMUDMU ), SE (TGLStructure of TGLTGL ), SF (EDOStructure of EDOEDO ), SG (TGLStructure of TGLTGL ), TE (CUAStructure of CUACUA ), TF (ZNStructure of ZNZN ), TG (EDOStructure of EDOEDO ), UE (CHDStructure of CHDCHD ), UF (EDOStructure of EDOEDO ), UG (EDOStructure of EDOEDO ), VE (PSCStructure of PSCPSC ), VF (EDOStructure of EDOEDO ), VG (CHDStructure of CHDCHD ), WD (CUStructure of CUCU ), WE (EDOStructure of EDOEDO ), WF (EDOStructure of EDOEDO ), WG (DMUStructure of DMUDMU ), XD (MGStructure of MGMG ), XE (EDOStructure of EDOEDO ), XF (EDOStructure of EDOEDO ), XG (EDOStructure of EDOEDO ), YD (NAStructure of NANA ), YE (DMUStructure of DMUDMU ), YF (EDOStructure of EDOEDO ), ZD (PERStructure of PERPER ), ZE (PEKStructure of PEKPEK ), ZF (EDOStructure of EDOEDO )
Each chain information

Showing 1 chain with heme of 13. Show all chains

Chain N heme  
auth_asym_id N
Residue indices (Uniprot) 1-514 (1-514)
Missing residues 1MET-1MET
Nonstandard amino acids Structure of FMEFME
Uniprot ID P00396 →UniprotKB
label_asym_ids of heme UD ,  VD
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å