PDB ID:  pdb_00008bcx
  • Crystal structure of NrfA-1 from Geobacter metallireducens
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 1.941 Å
  • Deposition date: 2022-10-17
Number of assemblies:  4
Assembly ID:  1  (author_defined_assembly)    
Structural data modeled
Oligomeric count 1
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others J (SO4Structure of SO4SO4 ), K (SO4Structure of SO4SO4 ), L (SO4Structure of SO4SO4 )
Each chain information
Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 39-488 (30-488)
Mutations (UniProt numbering)
Missing residues 63GLU-69GLY:310ARG-315LYS
Structural gaps Exists
Uniprot ID Q39YY5 →UniprotKB
label_asym_ids of heme I ,  H ,  G ,  F ,  E
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Assembly ID:  2  (author_defined_assembly)    
Structural data modeled
Oligomeric count 1
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others R (SO4Structure of SO4SO4 ), S (SO4Structure of SO4SO4 ), T (SO4Structure of SO4SO4 ), U (SO4Structure of SO4SO4 )
Each chain information
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 38-488 (30-488)
Mutations (UniProt numbering)
Missing residues 63GLU-73TYR:310ARG-315LYS
Structural gaps Exists
Uniprot ID Q39YY5 →UniprotKB
label_asym_ids of heme Q ,  P ,  O ,  N ,  M
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Assembly ID:  3  (author_defined_assembly)    
Structural data modeled
Oligomeric count 1
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (SO4Structure of SO4SO4 ), BA (SO4Structure of SO4SO4 ), CA (SO4Structure of SO4SO4 )
Each chain information
Chain C heme  
auth_asym_id C
Residue indices (Uniprot) 34-488 (30-488)
Mutations (UniProt numbering)
Missing residues 62THR-73TYR
Structural gaps Exists
Uniprot ID Q39YY5 →UniprotKB
label_asym_ids of heme Z ,  Y ,  X ,  W ,  V
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Assembly ID:  4  (author_defined_assembly)    
Structural data modeled
Oligomeric count 1
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others IA (SO4Structure of SO4SO4 ), JA (SO4Structure of SO4SO4 ), KA (SO4Structure of SO4SO4 ), LA (SO4Structure of SO4SO4 )
Each chain information
Chain D heme  
auth_asym_id D
Residue indices (Uniprot) 34-488 (30-488)
Mutations (UniProt numbering)
Missing residues 63GLU-73TYR
Structural gaps Exists
Uniprot ID Q39YY5 →UniprotKB
label_asym_ids of heme HA ,  GA ,  FA ,  EA ,  DA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å