Danish

PDB ID: pdb_00008j5k

Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2023-04-23

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	PDB
Oligomeric count	56
label_asym_ids of protein	56 chains (6 with heme) A, AA, AB, B, BA, BB, C, CA, CB, D, DA, DB, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA
label_asym_ids of heme	DE FH VD XG
label_asym_ids of the others	show AC (CLA), AD (CLA), AE (BCR), AF (CLA), AG (CLA), AH (LHG), AI (A86), AJ (CLA), AK (CLA), AL (CLA), AM (CLA), AN (CLA), AO (CLA), BC (CLA), BD (CLA), BE (LMG), BF (CLA), BG (CLA), BH (LMG), BI (A86), BJ (CLA), BK (CLA), BL (CLA), BM (CLA), BN (CLA), BO (CLA), CC (CLA), CD (BCR), CE (LMG), CF (CLA), CG (CLA), CH (BCR), CI (A86), CJ (CLA), CK (CLA), CL (A86), CM (CLA), CN (CLA), DC (CLA), DD (BCR), DF (CLA), DG (CLA), DH (LMG), DI (DD6), DJ (CLA), DK (CLA), DL (DD6), DM (CLA), DN (CLA), EB (OEX), EC (CLA), ED (BCR), EE (LMG), EF (CLA), EG (BCR), EH (LMG), EI (DD6), EJ (CLA), EK (CLA), EL (A86), EM (CLA), EN (CLA), FB (FE2), FC (CLA), FD (DGD), FE (CLA), FF (CLA), FG (BCR), FI (CLA), FJ (CLA), FK (A86), FL (A86), FM (A86), FN (CLA), GB (CLA), GC (CLA), GD (DGD), GE (LMG), GF (CLA), GG (BCR), GH (LMG), GI (CLA), GJ (CLA), GK (A86), GL (A86), GM (ET4), GN (CLA), HB (CLA), HC (BCR), HD (DGD), HE (CLA), HF (CLA), HG (DGD), HH (CLA), HI (CLA), HJ (CLA), HK (DD6), HL (CLA), HM (A86), HN (CLA), IB (PHO), IC (BCR), ID (LMG), IE (OEX), IF (CLA), IG (DGD), IH (LMG), II (CLA), IJ (CLA), IK (CLA), IL (CLA), IM (CLA), IN (CLA), JB (PHO), JC (BCR), JD (CLA), JE (FE2), JF (CLA), JG (DGD), JH (CLA), JI (CLA), JJ (CLA), JK (CLA), JL (CLA), JM (CLA), JN (CLA), KB (CLA), KC (LMG), KD (BCT), KE (CLA), KF (CLA), KG (LMG), KH (A86), KI (CLA), KJ (CLA), KK (CLA), KL (CLA), KM (CLA), KN (CLA), LB (BCR), LC (LHG), LD (CLA), LE (CLA), LF (BCR), LG (CLA), LH (ET4), LI (CLA), LJ (CLA), LK (CLA), LL (CLA), LM (CLA), LN (CLA), MB (SQD), MC (SQD), MD (CLA), ME (PHO), MF (BCR), MG (BCT), MH (A86), MI (CLA), MJ (CLA), MK (CLA), ML (CLA), MM (CLA), MN (CLA), NB (PL9), NC (SQD), ND (BCR), NE (PHO), NF (BCR), NG (CLA), NH (CLA), NI (CLA), NJ (CLA), NK (CLA), NL (CLA), NM (CLA), NN (A86), OB (SQD), OC (CL), OD (PL9), OE (CLA), OF (LMG), OG (CLA), OH (CLA), OI (CLA), OJ (CLA), OK (CLA), OL (CLA), OM (CLA), ON (DD6), PB (LHG), PC (CLA), PD (LHG), PE (BCR), PF (LHG), PG (BCR), PH (CLA), PI (CLA), PJ (CLA), PK (CLA), PL (CLA), PM (CLA), PN (DD6), QB (LHG), QC (CLA), QD (LMG), QE (SQD), QF (CL), QG (PL9), QH (CLA), QI (CLA), QJ (A86), QK (CLA), QL (CLA), QM (CLA), QN (CLA), RB (CLA), RC (CLA), RD (LMG), RE (PL9), RF (CLA), RG (LHG), RH (CLA), RI (CLA), RJ (DD6), RK (CLA), RL (A86), RM (CLA), RN (CLA), SB (CLA), SC (CLA), SD (LMG), SE (LHG), SF (CLA), SG (LMG), SH (CLA), SI (A86), SJ (A86), SK (CLA), SL (A86), SM (CLA), SN (CLA), TB (CLA), TC (CLA), TD (LHG), TE (LHG), TF (CLA), TG (LMG), TH (CLA), TI (DD6), TJ (A86), TK (CLA), TL (DD6), TM (LMG), TN (CLA), UB (CLA), UC (CLA), UD (LHG), UE (SQD), UF (CLA), UG (LMG), UH (CLA), UI (DD6), UJ (A86), UK (CLA), UL (CLA), UM (SQD), UN (CLA), VB (CLA), VC (CLA), VE (CLA), VF (CLA), VG (LHG), VH (CLA), VI (CLA), VJ (CLA), VK (CLA), VL (CLA), VM (A86), VN (CLA), WB (CLA), WC (CLA), WD (BCR), WE (CLA), WF (CLA), WG (LHG), WH (CLA), WI (CLA), WJ (CLA), WK (CLA), WL (CLA), WM (A86), WN (CLA), XB (CLA), XC (CLA), XD (DGD), XE (CLA), XF (CLA), XH (CLA), XI (CLA), XJ (CLA), XK (CLA), XL (CLA), XM (A86), XN (CLA), YB (CLA), YC (CLA), YD (LHG), YE (CLA), YF (CLA), YG (BCR), YH (LMG), YI (CLA), YJ (CLA), YK (CLA), YL (CLA), YM (DD6), YN (CLA), ZB (CLA), ZC (CLA), ZD (LMG), ZE (CLA), ZF (CLA), ZG (DGD), ZH (SQD), ZI (CLA), ZJ (CLA), ZK (CLA), ZL (CLA), ZM (DD6), ZN (CLA)

Each chain information

Showing all 56 chains (6 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	11-343 (11-343)
Mutations (UniProt numbering)	A68S, I83V, A124S, S125A, L281V, L285I, I321L, D325N, M328I
Uniprot ID	A0T0W2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA heme
auth_asym_id	e
Residue indices (Uniprot)	8-82 (9-83)
Mutations (UniProt numbering)	T25S
Uniprot ID	A0T0U2 ￫UniprotKB
label_asym_ids of heme	XG
Available structure	PDB

Chain AB
auth_asym_id	8
Residue indices (Uniprot)	33-195 (34-196)
Mutations (UniProt numbering)	P41A, R50K, F62Q, N101R, T130A, D145A, A154S, L185Y
Uniprot ID	A0ABD3QR39 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-482 (2-482)
Mutations (UniProt numbering)	V174I, A243S, D350E, F453Y
Uniprot ID	P49471 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA heme
auth_asym_id	f
Residue indices (Uniprot)	15-45 (13-43)
Uniprot ID	A0T0U1 ￫UniprotKB
label_asym_ids of heme	XG
Available structure	PDB

Chain BB
auth_asym_id	0
Residue indices (Uniprot)	37-205 (84-252)
Uniprot ID	A0ABD3QUK6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	23-472 (21-470)
Mutations (UniProt numbering)	V122I, V168L, L196Y, I231V, L240I, I244V, S310A, I437V, S443A, N458D, A460D, N461F, R468T, D471L
Uniprot ID	P49472 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	h
Residue indices (Uniprot)	14-78 (2-66)
Uniprot ID	B7XBY7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CB
auth_asym_id	2
Residue indices (Uniprot)	23-186 (32-195)
Uniprot ID	A0ABD3PA03 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	13-352 (12-351)
Mutations (UniProt numbering)	R23K, I34L, F48M, M84V, A111T, I113V, A276T, I318H, N321D, S326A
Uniprot ID	A0T0T0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	i
Residue indices (Uniprot)	1-34 (1-34)
Uniprot ID	A0T0U9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DB
auth_asym_id	1
Residue indices (Uniprot)	36-199 (99-255)
Mutations (UniProt numbering)	I515G, P516L, I517P, V518F, G519L, E520Y, M521N
Uniprot ID	A0ABD3PB22 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	8-82 (9-83)
Mutations (UniProt numbering)	T25S
Uniprot ID	A0T0U2 ￫UniprotKB
label_asym_ids of heme	VD
Available structure	PDB

Chain EA
auth_asym_id	j
Residue indices (Uniprot)	6-39 (5-38)
Uniprot ID	A0T0T9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	15-45 (13-43)
Uniprot ID	A0T0U1 ￫UniprotKB
label_asym_ids of heme	VD
Available structure	PDB

Chain FA
auth_asym_id	k
Residue indices (Uniprot)	23-59 (25-61)
Uniprot ID	Q09X34 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G
auth_asym_id	H
Residue indices (Uniprot)	14-78 (2-66)
Uniprot ID	B7XBY7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	l
Residue indices (Uniprot)	2-38 (2-38)
Uniprot ID	A0T0U0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-34 (1-34)
Uniprot ID	A0T0U9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	m
Residue indices (Uniprot)	2-42 (44-84)
Uniprot ID	A0A679C2A0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	J
Residue indices (Uniprot)	6-39 (5-38)
Uniprot ID	A0T0T9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	n
Residue indices (Uniprot)	1-30 (-)
Nonstandard amino acids	UNK
Unknown residues	Included
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	23-59 (25-61)
Uniprot ID	Q09X34 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	o
Residue indices (Uniprot)	90-337 (60-307)
Mutations (UniProt numbering)	N155S, D306E
Uniprot ID	B6ZHE8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	2-38 (2-38)
Uniprot ID	A0T0U0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	q
Residue indices (Uniprot)	65-209 (65-209)
Mutations (UniProt numbering)	V70I, N110S, A133G
Uniprot ID	B6ZHE9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	M
Residue indices (Uniprot)	2-42 (44-84)
Uniprot ID	A0A679C2A0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	t
Residue indices (Uniprot)	1-29 (1-29)
Uniprot ID	P49516 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	N
Residue indices (Uniprot)	1-30 (-)
Nonstandard amino acids	UNK
Unknown residues	Included
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain MA
auth_asym_id	u
Residue indices (Uniprot)	11-102 (59-150)
Mutations (UniProt numbering)	V81I, A108S
Uniprot ID	B6ZHF0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	O
Residue indices (Uniprot)	90-337 (60-307)
Mutations (UniProt numbering)	N155S, D306E
Uniprot ID	B6ZHE8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain NA heme
auth_asym_id	v
Residue indices (Uniprot)	1-136 (27-162)
Uniprot ID	A0A8F5GGT9 ￫UniprotKB
label_asym_ids of heme	FH
Available structure	PDB

Chain O
auth_asym_id	Q
Residue indices (Uniprot)	65-209 (65-209)
Mutations (UniProt numbering)	V70I, N110S, A133G
Uniprot ID	B6ZHE9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain OA
auth_asym_id	w
Residue indices (Uniprot)	92-141 (101-143)
Mutations (UniProt numbering)	T114K, V116I, K118R, N142S, A144X, K145X
Nonstandard amino acids	UNK
Unknown residues	Included
Uniprot ID	A0AAD3CWA0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	T
Residue indices (Uniprot)	1-29 (1-29)
Uniprot ID	P49516 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain PA
auth_asym_id	x
Residue indices (Uniprot)	80-113 (1-34)
Uniprot ID	B6ZHF2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	U
Residue indices (Uniprot)	11-102 (59-150)
Mutations (UniProt numbering)	V81I, A108S
Uniprot ID	B6ZHF0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain QA
auth_asym_id	y
Residue indices (Uniprot)	14-46 (2-34)
Uniprot ID	A0T0V3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R heme
auth_asym_id	V
Residue indices (Uniprot)	1-136 (27-162)
Uniprot ID	A0A8F5GGT9 ￫UniprotKB
label_asym_ids of heme	DE
Available structure	PDB

Chain RA
auth_asym_id	z
Residue indices (Uniprot)	4-62 (1-59)
Uniprot ID	A0T0T3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	W
Residue indices (Uniprot)	92-141 (101-143)
Mutations (UniProt numbering)	T114K, V116I, K118R, N142S, A144X, K145X
Nonstandard amino acids	UNK
Unknown residues	Included
Uniprot ID	A0AAD3CWA0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain SA
auth_asym_id	5
Residue indices (Uniprot)	37-205 (84-252)
Uniprot ID	A0ABD3QUK6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	X
Residue indices (Uniprot)	80-113 (1-34)
Uniprot ID	B6ZHF2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain TA
auth_asym_id	7
Residue indices (Uniprot)	23-186 (32-195)
Uniprot ID	A0ABD3PA03 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	Y
Residue indices (Uniprot)	14-46 (2-34)
Uniprot ID	A0T0V3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain UA
auth_asym_id	6
Residue indices (Uniprot)	36-199 (99-255)
Mutations (UniProt numbering)	I515G, P516L, I517P, V518F, G519L, E520Y, M521N
Uniprot ID	A0ABD3PB22 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	Z
Residue indices (Uniprot)	4-62 (1-59)
Uniprot ID	A0T0T3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain VA
auth_asym_id	p
Residue indices (Uniprot)	35-248 (35-248)
Uniprot ID	A0ABD3Q2Q7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	a
Residue indices (Uniprot)	11-343 (11-343)
Mutations (UniProt numbering)	A68S, I83V, A124S, S125A, L281V, L285I, I321L, D325N, M328I
Uniprot ID	A0T0W2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain WA
auth_asym_id	4
Residue indices (Uniprot)	8-160 (-)
Nonstandard amino acids	UNK
Unknown residues	Included
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	b
Residue indices (Uniprot)	2-482 (2-482)
Mutations (UniProt numbering)	V174I, A243S, D350E, F453Y
Uniprot ID	P49471 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain XA
auth_asym_id	3
Residue indices (Uniprot)	33-195 (34-196)
Mutations (UniProt numbering)	P41A, R50K, F62Q, N101R, T130A, D145A, A154S, L185Y
Uniprot ID	A0ABD3QR39 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	c
Residue indices (Uniprot)	23-472 (21-470)
Mutations (UniProt numbering)	V122I, V168L, L196Y, I231V, L240I, I244V, S310A, I437V, S443A, N458D, A460D, N461F, R468T, D471L
Uniprot ID	P49472 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain YA
auth_asym_id	P
Residue indices (Uniprot)	35-248 (35-248)
Uniprot ID	A0ABD3Q2Q7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	d
Residue indices (Uniprot)	13-352 (12-351)
Mutations (UniProt numbering)	R23K, I34L, F48M, M84V, A111T, I113V, A276T, I318H, N321D, S326A
Uniprot ID	A0T0T0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain ZA
auth_asym_id	9
Residue indices (Uniprot)	8-160 (-)
Nonstandard amino acids	UNK
Unknown residues	Included
Uniprot ID	Unavailable
label_asym_ids of heme	None
Available structure	PDB