Danish

PDB ID: pdb_00008wdu

Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2023-09-16

Number of assemblies: 1

Assembly ID: 0 (author_and_software_defined_assembly)
Structural data	modeled
Oligomeric count	36
label_asym_ids of protein	36 chains (1 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme	KA LA MA NA
label_asym_ids of the others	show AB (UQ8), AC (LMT), AD (BCL), AE (BCL), BB (PGV), BC (BCL), BD (CRT), BE (CRT), CB (CDL), CC (CRT), CD (LMT), CE (BCL), DB (FE), DC (PGV), DD (LMT), DE (LMT), EB (BCL), EC (BCL), ED (BCL), EE (BCL), FB (BCL), FC (CA), FD (CA), FE (CRT), GB (BPH), GC (LMT), GD (BCL), GE (LMT), HB (MQ8), HC (BCL), HD (CRT), HE (LMT), IB (CRT), IC (CRT), ID (LMT), IE (BCL), JB (CDL), JC (BCL), JD (BCL), JE (BCL), KB (PGV), KC (LMT), KD (CA), KE (CRT), LB (CDL), LC (BCL), LD (BCL), LE (BCL), MB (LMT), MC (CRT), MD (CRT), ME (LMT), NB (LMT), NC (LMT), ND (BCL), NE (BCL), OA (MG), OB (PGV), OC (LDA), OD (CA), OE (LMT), PA (Z41), PB (CDL), PC (BCL), PD (LMT), PE (CRT), QA (PLM), QB (LMT), QC (BCL), QD (BCL), QE (BCL), RA (PGV), RB (PGV), RC (CRT), RD (CRT), RE (BCL), SA (BCL), SB (BCL), SC (LDA), SD (BCL), SE (CRT), TA (BPH), TB (PGV), TC (BCL), TD (CA), UA (UQ8), UB (LMT), UC (LMT), UD (LMT), VA (UQ8), VB (BCL), VC (BCL), VD (BCL), WA (PGV), WB (CRT), WC (CRT), WD (CRT), XA (PGV), XB (CDL), XC (LMT), XD (PGV), YA (LMT), YB (BCL), YC (PGV), YD (BCL), ZA (BCL), ZB (CA), ZC (BCL), ZD (LMT)

Each chain information

Showing all 36 chains (1 with heme). Show only chains with heme

Chain A heme
auth_asym_id	C
Residue indices (Uniprot)	23-333 (1-383)
Uniprot ID	O82947 ￫UniprotKB
label_asym_ids of heme	NA , MA , LA , KA
Available structure	PDB

Chain AA
auth_asym_id	1
Residue indices (Uniprot)	5-47 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain B
auth_asym_id	L
Residue indices (Uniprot)	2-278 (1-278)
Uniprot ID	P51762 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	2
Residue indices (Uniprot)	7-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	M
Residue indices (Uniprot)	2-319 (1-325)
Uniprot ID	P51763 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	3
Residue indices (Uniprot)	4-66 (1-66)
Uniprot ID	D3RP67 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	H
Residue indices (Uniprot)	1-259 (1-259)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	D3RPF6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.10 Å

Chain DA
auth_asym_id	4
Residue indices (Uniprot)	6-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E
auth_asym_id	A
Residue indices (Uniprot)	5-47 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain EA
auth_asym_id	5
Residue indices (Uniprot)	5-47 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain F
auth_asym_id	B
Residue indices (Uniprot)	4-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain FA
auth_asym_id	6
Residue indices (Uniprot)	10-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G
auth_asym_id	D
Residue indices (Uniprot)	2-50 (1-64)
Uniprot ID	D3RP74 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	7
Residue indices (Uniprot)	5-46 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain H
auth_asym_id	E
Residue indices (Uniprot)	7-47 (1-47)
Uniprot ID	D3RP68 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	8
Residue indices (Uniprot)	7-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	F
Residue indices (Uniprot)	2-50 (1-64)
Uniprot ID	D3RP74 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	9
Residue indices (Uniprot)	5-47 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain J
auth_asym_id	G
Residue indices (Uniprot)	8-47 (1-47)
Uniprot ID	D3RP68 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	0
Residue indices (Uniprot)	5-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	I
Residue indices (Uniprot)	5-47 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain L
auth_asym_id	J
Residue indices (Uniprot)	9-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	K
Residue indices (Uniprot)	5-48 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain N
auth_asym_id	N
Residue indices (Uniprot)	10-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	O
Residue indices (Uniprot)	5-48 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain P
auth_asym_id	P
Residue indices (Uniprot)	6-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	Q
Residue indices (Uniprot)	5-47 (1-44)
Missing residues	5MET-5MET
Nonstandard amino acids	FME
Uniprot ID	D3RP69 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain R
auth_asym_id	R
Residue indices (Uniprot)	8-47 (1-46)
Uniprot ID	D3RP75 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	S
Residue indices (Uniprot)	2-51 (1-64)
Uniprot ID	D3RP74 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	T
Residue indices (Uniprot)	7-47 (1-47)
Uniprot ID	D3RP68 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	U
Residue indices (Uniprot)	2-51 (1-64)
Uniprot ID	D3RP74 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	V
Residue indices (Uniprot)	8-47 (1-47)
Uniprot ID	D3RP68 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	W
Residue indices (Uniprot)	2-51 (1-64)
Uniprot ID	D3RP74 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	X
Residue indices (Uniprot)	7-47 (1-47)
Uniprot ID	D3RP68 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	Y
Residue indices (Uniprot)	3-64 (1-64)
Missing residues	55GLN-57VAL
Structural gaps	Exists
Uniprot ID	D3RP74 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain Z
auth_asym_id	Z
Residue indices (Uniprot)	7-47 (1-47)
Uniprot ID	D3RP68 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB