Danish

PDB ID: pdb_00008z9d

cryo-EM structure of PSII-LHCII megacomplex from spinach
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2024-04-23

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	modeled
Oligomeric count	112
label_asym_ids of protein	112 chains (8 with heme) A, AA, AB, AC, AD, B, BA, BB, BC, BD, C, CA, CB, CC, CD, D, DA, DB, DC, DD, E, EA, EB, EC, ED, F, FA, FB, FC, FD, G, GA, GB, GC, GD, H, HA, HB, HC, HD, I, IA, IB, IC, J, JA, JB, JC, K, KA, KB, KC, L, LA, LB, LC, M, MA, MB, MC, N, NA, NB, NC, O, OA, OB, OC, P, PA, PB, PC, Q, QA, QB, QC, R, RA, RB, RC, S, SA, SB, SC, T, TA, TB, TC, U, UA, UB, UC, V, VA, VB, VC, W, WA, WB, WC, X, XA, XB, XC, Y, YA, YB, YC, Z, ZA, ZB, ZC
label_asym_ids of heme	DL IR JZ QFA
label_asym_ids of the others	show AAA (XAT), ABA (XAT), ACA (CHL), ADA (CLA), AE (CLA), AEA (CLA), AF (CLA), AFA (CLA), AG (CLA), AGA (CHL), AH (LHG), AHA (CHL), AI (CLA), AJ (CLA), AK (CLA), AL (LHG), AM (LHG), AN (CLA), AO (CLA), AP (FE2), AQ (CLA), AR (DGD), AS (LHG), AT (LHG), AU (CLA), AV (LHG), AW (LHG), AX (LHG), AY (LHG), AZ (SQD), BAA (LHG), BBA (NEX), BCA (CHL), BDA (LUT), BE (CHL), BEA (CLA), BF (LUT), BFA (CLA), BG (CHL), BGA (CLA), BH (CHL), BHA (CLA), BI (CLA), BJ (CLA), BK (CLA), BL (LHG), BM (BCR), BN (CHL), BO (CLA), BP (CL), BQ (CLA), BR (LMG), BS (XAT), BT (CLA), BU (CLA), BV (LHG), BW (SQD), BX (DGD), BY (CLA), BZ (CLA), CAA (XAT), CBA (LHG), CCA (CLA), CDA (LUT), CE (CHL), CEA (CLA), CF (LUT), CFA (CLA), CG (CHL), CGA (CLA), CH (CLA), CHA (CLA), CI (CLA), CJ (CLA), CK (CLA), CL (DGD), CM (SQD), CN (CHL), CO (LUT), CP (CL), CQ (CLA), CR (CLA), CS (BCR), CT (CLA), CU (CLA), CV (CHL), CW (BCT), CX (DGD), CY (PHO), CZ (CLA), DAA (LHG), DBA (LMU), DCA (CLA), DDA (NEX), DE (CHL), DEA (CLA), DF (LHG), DFA (BCR), DG (CHL), DGA (CLA), DH (CLA), DHA (CLA), DI (LHG), DJ (CLA), DK (CLA), DM (SQD), DN (CHL), DO (BCR), DP (CLA), DQ (CLA), DR (CLA), DS (DGD), DT (CLA), DU (CLA), DV (CLA), DW (LHG), DX (DGD), DY (CLA), DZ (CLA), EAA (LHG), EBA (CLA), ECA (CLA), EDA (LHG), EE (CLA), EEA (CLA), EF (CHL), EFA (BCR), EG (CHL), EGA (CLA), EH (CLA), EHA (CHL), EI (CHL), EJ (CLA), EK (CLA), EL (LMG), EM (CHL), EN (CLA), EO (LMG), EP (CLA), EQ (BCR), ER (BCR), ES (LMG), ET (CLA), EU (LUT), EV (CLA), EW (LMG), EX (SQD), EY (CLA), EZ (CLA), FAA (LHG), FBA (CLA), FCA (CLA), FDA (DGD), FE (CLA), FEA (CLA), FF (CLA), FFA (BCR), FG (CLA), FGA (CLA), FH (CHL), FHA (CHL), FI (CLA), FJ (LUT), FK (CLA), FL (CHL), FM (CLA), FN (CLA), FO (CLA), FP (CLA), FQ (BCR), FR (PL9), FS (BCR), FT (CHL), FU (LUT), FV (CLA), FW (CLA), FX (CLA), FY (BCR), FZ (CLA), GAA (LMU), GBA (CLA), GCA (CLA), GDA (FE2), GE (CLA), GEA (CLA), GF (CLA), GFA (DGD), GG (CLA), GGA (LUT), GH (CHL), GHA (CHL), GI (CLA), GJ (CHL), GK (CLA), GL (CLA), GM (CLA), GN (CLA), GO (CHL), GP (PHO), GQ (BCR), GR (LHG), GS (LHG), GT (CHL), GU (LHG), GV (CHL), GW (CLA), GX (CLA), GY (PL9), GZ (CLA), HAA (BCR), HBA (CHL), HCA (CLA), HDA (CL), HE (CLA), HEA (CLA), HF (CLA), HFA (DGD), HG (CLA), HGA (LUT), HH (CHL), HHA (CHL), HI (CLA), HJ (CLA), HK (CLA), HL (CLA), HM (CLA), HN (CLA), HO (CLA), HP (PHO), HQ (LMG), HR (LHG), HS (SQD), HT (CHL), HU (XAT), HV (CHL), HW (CLA), HX (CLA), HY (LHG), HZ (CLA), IAA (SQD), IBA (CHL), ICA (LUT), ID (OEX), IDA (CL), IE (CLA), IEA (CLA), IF (CHL), IFA (CLA), IG (LUT), IGA (NEX), IH (CHL), IHA (CHL), II (CHL), IJ (CLA), IK (CLA), IL (CLA), IM (CHL), IN (CLA), IO (CLA), IP (CLA), IQ (LMG), IS (LMG), IT (CLA), IU (XAT), IV (CHL), IW (CLA), IX (CLA), IY (LHG), IZ (LHG), JAA (SQD), JBA (CHL), JCA (BCR), JD (FE2), JDA (CLA), JE (CLA), JEA (BCR), JF (CHL), JFA (CLA), JG (XAT), JGA (LHG), JH (CLA), JI (CHL), JJ (CLA), JK (CLA), JL (CHL), JM (CHL), JN (CLA), JO (CLA), JP (BCR), JQ (CLA), JR (CHL), JS (CHL), JT (CLA), JU (CHL), JV (CHL), JW (CLA), JX (CLA), JY (LMG), KAA (CHL), KBA (CLA), KCA (LMG), KD (CL), KDA (CLA), KE (LUT), KEA (BCR), KF (CHL), KFA (BCR), KG (LHG), KGA (BCR), KH (CLA), KI (CHL), KJ (CHL), KK (BCR), KL (CHL), KM (CHL), KN (CLA), KO (CHL), KP (LMG), KQ (CLA), KR (CLA), KS (CLA), KT (CLA), KU (CLA), KV (CLA), KW (CLA), KX (CLA), KY (DGD), KZ (CHL), LAA (CLA), LBA (CLA), LCA (CLA), LD (CL), LDA (CLA), LE (XAT), LEA (BCR), LF (CHL), LFA (PL9), LG (CLA), LGA (DGD), LH (CLA), LI (CHL), LJ (CHL), LK (BCR), LL (CHL), LM (CHL), LN (LUT), LO (CHL), LP (BCT), LQ (CLA), LR (CLA), LS (CLA), LT (CLA), LU (CLA), LV (CLA), LW (CLA), LX (CLA), LY (SQD), LZ (CLA), MAA (CLA), MBA (CLA), MCA (BCR), MD (CLA), MDA (PHO), ME (NEX), MEA (LMG), MF (CHL), MFA (LHG), MG (LHG), MGA (BCR), MH (CLA), MI (CLA), MJ (CHL), MK (BCR), ML (CHL), MM (CHL), MN (XAT), MO (CHL), MP (LHG), MQ (CLA), MR (CLA), MS (CLA), MT (CLA), MU (CLA), MV (CLA), MW (CLA), MX (CLA), MY (DGD), MZ (CLA), NAA (CLA), NBA (CLA), NCA (CHL), ND (CLA), NDA (PHO), NE (LHG), NEA (LMG), NF (CLA), NFA (LHG), NG (CHL), NGA (SQD), NH (CLA), NI (CLA), NJ (CHL), NK (DGD), NL (CHL), NM (CLA), NN (NEX), NO (CHL), NP (DGD), NQ (CLA), NR (CHL), NS (CHL), NT (CLA), NU (CHL), NV (LUT), NW (CLA), NX (CLA), NY (CLA), NZ (CLA), OAA (CHL), OBA (CLA), OCA (CLA), OD (PHO), ODA (CLA), OE (CHL), OEA (LMG), OF (CLA), OFA (LHG), OG (CLA), OGA (LHG), OH (LUT), OI (CLA), OJ (CLA), OK (DGD), OL (CLA), OM (CLA), ON (LMU), OO (CHL), OP (CLA), OQ (CLA), OR (CHL), OS (CHL), OT (LUT), OU (CHL), OV (XAT), OW (CLA), OX (CLA), OY (CLA), OZ (CHL), PAA (CHL), PBA (CLA), PCA (CLA), PD (CLA), PDA (BCR), PE (CLA), PEA (OEX), PF (CLA), PFA (LMG), PG (CLA), PGA (LMG), PH (LHG), PI (CLA), PJ (CLA), PK (LMG), PL (CLA), PM (CLA), PN (CHL), PO (CLA), PP (CLA), PQ (CLA), PR (CHL), PS (CHL), PT (XAT), PU (CHL), PV (LHG), PW (CLA), PX (CLA), PY (CLA), PZ (CHL), QAA (CHL), QBA (CLA), QCA (CLA), QD (BCR), QDA (LMG), QE (CLA), QEA (CLA), QF (CLA), QG (CLA), QGA (CLA), QH (CHL), QI (CLA), QJ (CLA), QK (LHG), QL (CLA), QM (CLA), QN (CLA), QO (CLA), QP (CLA), QQ (CLA), QR (CHL), QS (CHL), QT (LHG), QU (CHL), QV (OEX), QW (CLA), QX (CLA), QY (CLA), QZ (CHL), RAA (CHL), RBA (LUT), RCA (CHL), RD (PL9), RDA (SQD), RE (CLA), REA (CLA), RF (CLA), RFA (XAT), RG (CHL), RGA (CLA), RH (CLA), RI (LHG), RJ (CLA), RK (DGD), RL (CLA), RM (CLA), RN (CLA), RO (CLA), RP (CLA), RQ (CLA), RR (CHL), RS (CHL), RT (CHL), RU (CHL), RV (FE2), RW (CLA), RX (CLA), RY (CLA), RZ (CHL), SAA (CHL), SBA (XAT), SCA (CHL), SD (LHG), SDA (BCT), SE (CHL), SEA (CLA), SF (LUT), SFA (CHL), SG (CHL), SGA (CLA), SH (CLA), SI (CHL), SJ (CLA), SK (CLA), SL (CLA), SM (LUT), SN (CLA), SO (CLA), SP (CLA), SQ (CLA), SR (CLA), SS (CLA), ST (CLA), SU (CLA), SV (CL), SW (CLA), SX (BCR), SY (CLA), SZ (CHL), TAA (CLA), TBA (NEX), TCA (CHL), TD (SQD), TDA (CLA), TE (CHL), TEA (CLA), TF (LUT), TFA (CLA), TG (CHL), TGA (CLA), TH (CLA), TI (CLA), TJ (LHG), TK (PHO), TL (LUT), TM (LUT), TN (CHL), TO (CLA), TP (CLA), TQ (CLA), TR (CLA), TS (CLA), TT (CLA), TU (CLA), TV (CL), TW (CLA), TX (BCR), TY (CLA), TZ (CLA), UAA (CLA), UBA (LHG), UCA (CHL), UD (LHG), UDA (CLA), UE (CHL), UEA (CLA), UF (NEX), UFA (CLA), UG (CHL), UGA (CLA), UH (CHL), UI (CLA), UJ (LHG), UK (BCT), UL (LUT), UM (XAT), UN (CHL), UO (LUT), UP (CLA), UQ (CLA), UR (CLA), US (CLA), UT (CLA), UU (CLA), UV (CLA), UW (BCR), UX (BCR), UY (CLA), UZ (CLA), VAA (CLA), VBA (CHL), VCA (CHL), VD (LHG), VDA (CLA), VE (CLA), VEA (CLA), VF (LHG), VFA (CLA), VG (CLA), VGA (LUT), VH (CHL), VI (CLA), VJ (SQD), VK (CLA), VL (XAT), VM (NEX), VN (CHL), VO (LUT), VP (CLA), VQ (CLA), VR (CLA), VS (CLA), VT (CHL), VU (CLA), VV (CLA), VW (BCR), VX (DGD), VY (BCR), VZ (CLA), WAA (CLA), WBA (CLA), WCA (CLA), WD (LMG), WDA (CLA), WE (CLA), WEA (CLA), WF (XAT), WFA (CHL), WG (CLA), WGA (LUT), WH (CHL), WI (CHL), WJ (LMU), WK (CLA), WL (LHG), WM (LHG), WN (CLA), WO (NEX), WP (CLA), WQ (BCR), WR (CLA), WS (CLA), WT (CHL), WU (CLA), WV (PHO), WW (BCR), WX (DGD), WY (BCR), WZ (CLA), XAA (CLA), XBA (CLA), XCA (CLA), XD (CLA), XDA (CLA), XE (CLA), XEA (CLA), XF (CHL), XFA (CHL), XG (CLA), XGA (XAT), XH (CHL), XI (CHL), XJ (CLA), XK (BCR), XL (XAT), XM (CLA), XN (CLA), XO (LHG), XP (CLA), XQ (BCR), XR (LUT), XS (LUT), XT (CHL), XU (LUT), XV (CLA), XW (LMG), XX (LMG), XY (BCR), XZ (CLA), YAA (LUT), YBA (CLA), YCA (CLA), YD (CLA), YDA (CLA), YE (CLA), YEA (CLA), YF (CLA), YFA (CHL), YG (CLA), YGA (NEX), YH (CLA), YI (CHL), YJ (CLA), YK (PL9), YL (BCR), YM (CLA), YN (CLA), YO (NEX), YP (CLA), YQ (BCR), YR (LUT), YS (LUT), YT (CLA), YU (LUT), YV (BCR), YW (BCR), YX (LHG), YY (LMG), YZ (LUT), ZAA (LUT), ZBA (CHL), ZCA (CLA), ZD (CLA), ZDA (CLA), ZE (CLA), ZEA (CLA), ZF (CLA), ZFA (CHL), ZG (CLA), ZGA (LHG), ZH (CLA), ZI (CHL), ZJ (CLA), ZK (LHG), ZL (LHG), ZM (CLA), ZN (CLA), ZO (OEX), ZP (CLA), ZQ (DGD), ZR (NEX), ZS (NEX), ZT (CLA), ZU (NEX), ZV (PL9), ZW (SQD), ZX (DGD), ZY (BCR), ZZ (LUT)

Each chain information

Showing 8 chains with heme of 112. Show all chains

Chain AB heme
auth_asym_id	e
Residue indices (Uniprot)	8-82 (1-83)
Uniprot ID	P69383 ￫UniprotKB
label_asym_ids of heme	IR
Available structure	PDB

Chain AC heme
auth_asym_id	FF
Residue indices (Uniprot)	12-45 (1-39)
Uniprot ID	P60128 ￫UniprotKB
label_asym_ids of heme	JZ
Available structure	PDB

Chain BA heme
auth_asym_id	E
Residue indices (Uniprot)	2-81 (1-83)
Uniprot ID	P69383 ￫UniprotKB
label_asym_ids of heme	DL
Available structure	PDB

Chain BB heme
auth_asym_id	f
Residue indices (Uniprot)	15-45 (1-39)
Uniprot ID	P60128 ￫UniprotKB
label_asym_ids of heme	IR
Available structure	PDB

Chain CA heme
auth_asym_id	F
Residue indices (Uniprot)	12-45 (1-39)
Uniprot ID	P60128 ￫UniprotKB
label_asym_ids of heme	DL
Available structure	PDB

Chain YC heme
auth_asym_id	Ee
Residue indices (Uniprot)	8-82 (1-83)
Uniprot ID	P69383 ￫UniprotKB
label_asym_ids of heme	QFA
Available structure	PDB

Chain ZB heme
auth_asym_id	EE
Residue indices (Uniprot)	2-81 (1-83)
Uniprot ID	P69383 ￫UniprotKB
label_asym_ids of heme	JZ
Available structure	PDB

Chain ZC heme
auth_asym_id	Ff
Residue indices (Uniprot)	15-45 (1-39)
Uniprot ID	P60128 ￫UniprotKB
label_asym_ids of heme	QFA
Available structure	PDB