Danish
PDB ID:  pdb_00009es8
  • Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2024-03-25
Number of assemblies:  1
Assembly ID:  0  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 18
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AA (SQDStructure of SQDSQD ), BA (FESStructure of FESFES ), CA (UMQStructure of UMQUMQ ), GA (A1HStructure of A1HA1H ), HA (LMGStructure of LMGLMG ), IA (CLAStructure of CLACLA ), JA (UMQStructure of UMQUMQ ), LA (SQDStructure of SQDSQD ), MA (FESStructure of FESFES ), NA (UMQStructure of UMQUMQ ), OA (BCRStructure of BCRBCR ), PA (BCRStructure of BCRBCR ), V (A1HStructure of A1HA1H ), W (LMGStructure of LMGLMG ), X (CLAStructure of CLACLA ), Y (UMQStructure of UMQUMQ )
Each chain information

Showing all 18 chains (4 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 2-215 (1-215)
Uniprot ID P00165 ￫UniprotKB
label_asym_ids of heme T ,  S
Available structure PDB
Chain B  
auth_asym_id B
Residue indices (Uniprot) 2-160 (1-160)
Uniprot ID P00166 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C heme  
auth_asym_id C
Residue indices (Uniprot) 1-285 (1-320)
Missing residues 196ASP-201ARG
Structural gaps Exists
Uniprot ID P16013 ￫UniprotKB
label_asym_ids of heme Z
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain D  
auth_asym_id D
Residue indices (Uniprot) 8-179 (1-230)
Missing residues 46GLY-51GLY
Structural gaps Exists
Uniprot ID P08980 ￫UniprotKB
S-S bonds 112:127
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain E  
auth_asym_id E
Residue indices (Uniprot) 1-31 (1-31)
Uniprot ID Q9M3L0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id F
Residue indices (Uniprot) 1-37 (1-131)
Uniprot ID A0A9R0IV89 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id G
Residue indices (Uniprot) 1-33 (1-37)
Uniprot ID P69461 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id H
Residue indices (Uniprot) 1-29 (1-29)
Uniprot ID P61045 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I heme  
auth_asym_id I
Residue indices (Uniprot) 2-215 (1-215)
Uniprot ID P00165 ￫UniprotKB
label_asym_ids of heme EA ,  DA
Available structure PDB
Chain J  
auth_asym_id J
Residue indices (Uniprot) 2-160 (1-160)
Uniprot ID P00166 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K heme  
auth_asym_id K
Residue indices (Uniprot) 1-285 (1-320)
Missing residues 196ASP-201ARG
Structural gaps Exists
Uniprot ID P16013 ￫UniprotKB
label_asym_ids of heme KA
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain L  
auth_asym_id L
Residue indices (Uniprot) 8-179 (1-230)
Missing residues 46GLY-51GLY
Structural gaps Exists
Uniprot ID P08980 ￫UniprotKB
S-S bonds 112:127
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain M  
auth_asym_id M
Residue indices (Uniprot) 1-31 (1-31)
Uniprot ID Q9M3L0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N  
auth_asym_id N
Residue indices (Uniprot) 1-37 (1-131)
Uniprot ID A0A9R0IV89 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain O  
auth_asym_id O
Residue indices (Uniprot) 1-33 (1-37)
Uniprot ID P69461 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain P  
auth_asym_id P
Residue indices (Uniprot) 1-29 (1-29)
Uniprot ID P61045 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id Q
Residue indices (Uniprot) 32-57 (1-103)
Uniprot ID Q8GT36 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id R
Residue indices (Uniprot) 32-57 (1-103)
Uniprot ID Q8GT36 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB