Danish
PDB ID:  pdb_00009fno
  • Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: 5.2 Å
  • Deposition date: 2024-06-10
Number of assemblies:  1
Assembly ID:  0  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 6
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others C (VALStructure of VALVAL , CYSStructure of CYSCYS , GLYStructure of GLYGLY , LYSStructure of LYSLYS , PROStructure of PROPRO , ASNStructure of ASNASN , ALAStructure of ALAALA ), J (NAGStructure of NAGNAG ), K (NAGStructure of NAGNAG ), L (NAGStructure of NAGNAG ), M (CAStructure of CACA ), N (CAStructure of CACA ), O (NAGStructure of NAGNAG ), P (NAGStructure of NAGNAG ), Q (NAGStructure of NAGNAG ), R (CAStructure of CACA ), S (NAGStructure of NAGNAG ), T (NAGStructure of NAGNAG ), U (NAGStructure of NAGNAG ), V (CAStructure of CACA ), W (NAGStructure of NAGNAG ), X (NAGStructure of NAGNAG ), Y (NAGStructure of NAGNAG )
Each chain information

Showing all 6 chains (2 with heme). Show only chains with heme

Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-141 (1-142)
Uniprot ID P69905 ￫UniprotKB
label_asym_ids of heme H
Available structure PDB
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 1-146 (1-147)
Uniprot ID P68871 ￫UniprotKB
label_asym_ids of heme I
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 162-405 (162-406)
Uniprot ID P00738 ￫UniprotKB
S-S bonds 309:340,351:381
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id E
Residue indices (Uniprot) 154-1029 (1-1156)
Missing residues 694ASN-712ALA
Structural gaps Exists
Uniprot ID Q86VB7 ￫UniprotKB
S-S bonds 168:202,184:248,197:258,228:238,275:309,291:355,304:365,335:345,382:416,411:472,442:452,487:521,503:567,516:577,547:557,592:626,608:672,621:682,652:662,693:713,728:762,744:808,757:818,788:798,835:869,864:925,895:905,938:972,954:1018,967:1028,998:1008
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å
Chain F  
auth_asym_id F
Residue indices (Uniprot) 262-1029 (1-1156)
Missing residues 694ASN-712ALA
Structural gaps Exists
Uniprot ID Q86VB7 ￫UniprotKB
S-S bonds 275:309,291:355,304:365,335:345,382:416,411:472,442:452,487:521,503:567,516:577,547:557,592:626,608:672,621:682,652:662,693:713,728:762,744:808,757:818,788:798,835:869,864:925,895:905,938:972,954:1018,967:1028,998:1008
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain G  
auth_asym_id G
Residue indices (Uniprot) 262-1029 (1-1156)
Missing residues 694ASN-712ALA
Structural gaps Exists
Uniprot ID Q86VB7 ￫UniprotKB
S-S bonds 275:309,291:355,304:365,335:345,382:416,411:472,442:452,487:521,503:567,516:577,547:557,592:626,608:672,621:682,652:662,693:713,728:762,744:808,757:818,788:798,835:869,864:925,895:905,938:972,954:1018,967:1028,998:1008
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å