Danish

PDB ID: pdb_00009g6g

Semi-active PSII dimer from native Peak4 PSII dimers
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2024-07-18

Number of assemblies: 1

Assembly ID: 0 (author_and_software_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	35
label_asym_ids of protein	35 chains (5 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme	CE II YE
label_asym_ids of the others	show AB (PLM), AC (LMT), AD (LFA), AE (PLM), AF (BCR), AG (CLA), AH (CLA), AI (LHG), AJ (LMG), BB (CLA), BC (LFA), BD (PLM), BE (LFA), BF (CL), BG (CLA), BH (CLA), BI (LHG), BJ (BCR), CB (CLA), CC (PLM), CD (LFA), CF (CLA), CG (CLA), CH (CLA), CI (LMG), CJ (LMT), DB (CLA), DC (LFA), DD (PLM), DE (LMT), DF (CLA), DG (CLA), DH (CLA), DI (LFA), EB (CLA), EC (SQD), ED (LMG), EE (PLM), EF (PHO), EG (CLA), EH (CLA), EI (PLM), FB (CLA), FC (BCR), FD (LMT), FE (SQD), FF (CLA), FG (CLA), FH (CLA), FI (LFA), GB (CLA), GC (BCR), GD (BCR), GE (DGD), GF (BCR), GG (CLA), GH (CLA), GI (LFA), HB (CLA), HC (BCR), HD (PHO), HE (RRX), HF (SQD), HG (CLA), HH (CLA), HI (BCR), IB (CLA), IC (DGD), ID (PL9), IE (LFA), IF (LMG), IG (CLA), IH (CLA), JA (FE2), JB (CLA), JC (DGD), JD (BCR), JE (LFA), JF (PL9), JG (CLA), JH (DGD), JI (LMT), KA (CL), KB (CLA), KC (DGD), KD (CLA), KE (LFA), KF (SQD), KG (CLA), KH (DGD), KI (LFA), LA (CL), LB (CLA), LC (CLA), LD (CLA), LE (LMG), LF (LMT), LG (BCR), LH (DGD), LI (DGD), MA (CLA), MB (CLA), MC (CLA), MD (LHG), ME (LFA), MF (LFA), MG (BCR), MH (LMT), MI (PLM), NA (CLA), NB (CLA), NC (CLA), ND (LHG), NE (LFA), NF (PLM), NG (BCR), NH (PLM), NI (PLM), OA (CLA), OB (CLA), OC (CLA), OD (LHG), OE (LMT), OF (FE2), OG (LMG), OH (PLM), OI (PLM), PA (PHO), PB (CLA), PC (CLA), PD (LMG), PE (PLM), PF (BCT), PG (PLM), PH (PLM), PI (BCR), QA (CLA), QB (CLA), QC (CLA), QD (SQD), QE (PLM), QF (LHG), QG (PLM), QH (LMG), QI (LFA), RA (BCR), RB (BCR), RC (CLA), RD (DGD), RE (LHG), RF (LHG), RG (LFA), RH (PLM), RI (BCR), SA (PL9), SB (BCR), SC (CLA), SD (LFA), SE (LMT), SF (LFA), SG (LFA), SH (CLA), SI (BCR), TA (SQD), TB (LMG), TC (CLA), TD (LFA), TE (LMT), TF (LMT), TG (PLM), TH (PHO), TI (PLM), UA (LFA), UB (LMT), UC (CLA), UD (PLM), UE (CA), UF (SQD), UG (LFA), UH (LMT), UI (PLM), VA (LFA), VB (GOL), VC (CLA), VD (PLM), VE (BCR), VF (CLA), VG (PLM), VH (CLA), VI (LHG), WA (OEX), WB (LFA), WC (CLA), WD (LFA), WE (LMT), WF (CLA), WG (CLA), WH (CLA), WI (LFA), XA (SQD), XB (LFA), XC (CLA), XD (LMT), XE (LMT), XF (CLA), XG (CLA), XH (PL9), XI (BCR), YA (LMT), YB (PLM), YC (PLM), YD (LHG), YF (CLA), YG (CLA), YH (DGD), YI (PLM), ZA (BCT), ZB (LFA), ZC (LFA), ZD (PLM), ZE (LMG), ZF (CLA), ZG (CLA), ZH (SQD), ZI (RRX)

Each chain information

Showing all 35 chains (5 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	12-344 (1-360)
Uniprot ID	P0A444 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA
auth_asym_id	i
Residue indices (Uniprot)	1-35 (1-38)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-506 (1-510)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	j
Residue indices (Uniprot)	6-34 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	11-461 (1-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (1-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	12-352 (1-352)
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	l
Residue indices (Uniprot)	3-37 (1-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	4-83 (1-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	CE
Available structure	PDB

Chain EA
auth_asym_id	m
Residue indices (Uniprot)	1-33 (1-36)
Uniprot ID	Q8DHA7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	11-45 (1-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	CE
Available structure	PDB

Chain FA
auth_asym_id	t
Residue indices (Uniprot)	1-30 (1-32)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain G
auth_asym_id	H
Residue indices (Uniprot)	2-65 (1-66)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	x
Residue indices (Uniprot)	2-39 (1-41)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-38)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain HA
auth_asym_id	y
Residue indices (Uniprot)	18-46 (1-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	J
Residue indices (Uniprot)	6-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	10-46 (1-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	3-37 (1-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	M
Residue indices (Uniprot)	1-33 (1-36)
Uniprot ID	Q8DHA7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	O
Residue indices (Uniprot)	30-272 (1-272)
Uniprot ID	P0A431 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	T
Residue indices (Uniprot)	1-30 (1-32)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain O
auth_asym_id	U
Residue indices (Uniprot)	38-134 (1-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P heme
auth_asym_id	V
Residue indices (Uniprot)	27-163 (1-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	YE
Available structure	PDB

Chain Q
auth_asym_id	X
Residue indices (Uniprot)	2-39 (1-41)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	Y
Residue indices (Uniprot)	16-46 (1-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	Z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	a
Residue indices (Uniprot)	12-334 (1-360)
Mutations (UniProt numbering)	H332X
Nonstandard amino acids	HSK
Uniprot ID	P0A444 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	b
Residue indices (Uniprot)	2-505 (1-510)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	c
Residue indices (Uniprot)	12-461 (1-461)
Missing residues	313GLY-325LEU
Structural gaps	Exists
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.10 Å

Chain W
auth_asym_id	d
Residue indices (Uniprot)	12-352 (1-352)
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X heme
auth_asym_id	e
Residue indices (Uniprot)	8-83 (1-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	II
Available structure	PDB

Chain Y heme
auth_asym_id	f
Residue indices (Uniprot)	12-45 (1-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	II
Available structure	PDB

Chain Z
auth_asym_id	h
Residue indices (Uniprot)	2-65 (1-66)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB