Danish
PDB ID:  pdb_00009g9y
  • Respiratory supercomplex CI2-CIII2-CIV2 (megacomplex) from alphaproteobacterium
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2024-07-25
Number of assemblies:  1
Assembly ID:  0  (author_and_software_defined_assembly)    
Structural data including_not_modeled
Oligomeric count 54
label_asym_ids of protein
54 chains (6 with heme) A, AA, AB, B, BA, BB, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA
label_asym_ids of heme AD AE DD GD JD ND PC RC XC YD
label_asym_ids of the others
show AC (SF4), BC (DU0), BD (DU0), BE (MN), CB (SF4), CC (3PE), CD (U10), CE (3PE), DB (U10), DC (3PH), DE (CUA), EB (SF4), EC (P5S), ED (3PE), EE (3PE), FB (U10), FC (PC1), FD (CA), FE (PC1), GB (CA), GC (3PE), GE (PC1), HB (CA), HC (P5S), HD (3PH), HE (3PE), IB (FES), IC (3PH), ID (FES), IE (ZN), JB (FES), JC (PC1), JE (PC1), KB (SF4), KC (DU0), KD (3PH), KE (3PH), LB (FMN), LC (PC1), LD (CU), MB (FMN), MC (DU0), MD (CA), NB (SF4), NC (ZN), OB (SF4), OC (ZN), OD (MN), PB (SF4), PD (3PE), QB (FES), QC (U10), QD (CUA), RB (FES), RD (PC1), SB (SF4), SC (U10), SD (ZN), TB (SF4), TC (DU0), TD (3PE), UB (PC1), UC (CDL), UD (PC1), VB (PC1), VC (CA), VD (PC1), WB (PC1), WC (3PE), WD (CA), XB (SF4), XD (3PH), YB (SF4), YC (FES), ZB (SF4), ZC (U10), ZD (CU)
Each chain information

Showing all 54 chains (6 with heme). Show only chains with heme

Chain A  
auth_asym_id A
Residue indices (Uniprot) 1-121 (1-121)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B498 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.08 Å
Chain AA  
auth_asym_id N
Residue indices (Uniprot) 1-480 (1-499)
Uniprot ID A1B479 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain AB  
auth_asym_id q
Residue indices (Uniprot) 1-123 (1-124)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B1H8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain B  
auth_asym_id A1
Residue indices (Uniprot) 1-121 (1-121)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B498 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Chain BA  
auth_asym_id N1
Residue indices (Uniprot) 1-480 (1-499)
Uniprot ID A1B479 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BB  
auth_asym_id q1
Residue indices (Uniprot) 1-123 (1-124)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B1H8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain C  
auth_asym_id B
Residue indices (Uniprot) 14-175 (1-175)
Uniprot ID A1B497 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain CA  
auth_asym_id P
Residue indices (Uniprot) 3-330 (1-330)
Uniprot ID A1AZB0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id B1
Residue indices (Uniprot) 14-175 (1-175)
Uniprot ID A1B497 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain DA  
auth_asym_id P1
Residue indices (Uniprot) 3-330 (1-330)
Uniprot ID A1AZB0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id C
Residue indices (Uniprot) 4-197 (1-208)
Uniprot ID A1B496 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain EA  
auth_asym_id Q
Residue indices (Uniprot) 1-103 (1-103)
Uniprot ID A1B1M0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id C1
Residue indices (Uniprot) 4-197 (1-208)
Uniprot ID A1B496 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain FA  
auth_asym_id Q1
Residue indices (Uniprot) 1-103 (1-103)
Uniprot ID A1B1M0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id D
Residue indices (Uniprot) 2-412 (1-412)
Missing residues 65ARG-65ARG
Nonstandard amino acids 2MR Structure of 2MR2MR
Uniprot ID A1B495 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Chain GA  
auth_asym_id R
Residue indices (Uniprot) 2-62 (1-62)
Uniprot ID A1B357 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id D1
Residue indices (Uniprot) 2-412 (1-412)
Missing residues 65ARG-65ARG
Nonstandard amino acids 2MR Structure of 2MR2MR
Uniprot ID A1B495 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain HA  
auth_asym_id R1
Residue indices (Uniprot) 2-62 (1-62)
Uniprot ID A1B357 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id E
Residue indices (Uniprot) 1-237 (1-239)
Uniprot ID A1B494 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain IA  
auth_asym_id Z
Residue indices (Uniprot) 2-217 (1-217)
Uniprot ID A1B5L6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J  
auth_asym_id E1
Residue indices (Uniprot) 1-237 (1-239)
Uniprot ID A1B494 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain JA  
auth_asym_id Z1
Residue indices (Uniprot) 2-217 (1-217)
Uniprot ID A1B5L6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id F
Residue indices (Uniprot) 1-422 (1-431)
Uniprot ID A1B491 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain KA heme  
auth_asym_id a
Residue indices (Uniprot) 2-435 (1-440)
Uniprot ID A1B4F3 ￫UniprotKB
label_asym_ids of heme PC ,  RC
Available structure PDB
Chain L  
auth_asym_id F1
Residue indices (Uniprot) 1-422 (1-431)
Uniprot ID A1B491 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain LA heme  
auth_asym_id b
Residue indices (Uniprot) 212-450 (1-450)
Uniprot ID A1B4F4 ￫UniprotKB
label_asym_ids of heme XC
Available structure PDB
Chain M  
auth_asym_id G
Residue indices (Uniprot) 2-666 (1-674)
Uniprot ID A1B489 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain MA  
auth_asym_id c
Residue indices (Uniprot) 15-195 (1-195)
Uniprot ID A1B4F2 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N  
auth_asym_id G1
Residue indices (Uniprot) 2-666 (1-674)
Uniprot ID A1B489 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain NA heme  
auth_asym_id d
Residue indices (Uniprot) 2-435 (1-440)
Uniprot ID A1B4F3 ￫UniprotKB
label_asym_ids of heme AD ,  DD
Available structure PDB
Chain O  
auth_asym_id H
Residue indices (Uniprot) 2-342 (1-345)
Uniprot ID A1B487 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain OA heme  
auth_asym_id e
Residue indices (Uniprot) 212-450 (1-450)
Uniprot ID A1B4F4 ￫UniprotKB
label_asym_ids of heme GD
Available structure PDB
Chain P  
auth_asym_id H1
Residue indices (Uniprot) 2-342 (1-345)
Uniprot ID A1B487 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain PA  
auth_asym_id f
Residue indices (Uniprot) 15-195 (1-195)
Uniprot ID A1B4F2 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id I
Residue indices (Uniprot) 2-163 (1-163)
Uniprot ID A1B486 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain QA heme  
auth_asym_id g
Residue indices (Uniprot) 11-554 (1-558)
Uniprot ID A1B3D7 ￫UniprotKB
S-S bonds 66:80
label_asym_ids of heme JD ,  ND
Available structure PDB
Chain R  
auth_asym_id I1
Residue indices (Uniprot) 2-163 (1-163)
Uniprot ID A1B486 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain RA  
auth_asym_id h
Residue indices (Uniprot) 30-281 (1-298)
Uniprot ID A1BA41 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id J
Residue indices (Uniprot) 1-199 (1-199)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B483 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.07 Å
Chain SA  
auth_asym_id i
Residue indices (Uniprot) 2-274 (1-274)
Uniprot ID A1BA37 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id J1
Residue indices (Uniprot) 1-199 (1-199)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B483 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.09 Å
Chain TA  
auth_asym_id j
Residue indices (Uniprot) 8-50 (1-66)
Uniprot ID A1AZ52 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain U  
auth_asym_id K
Residue indices (Uniprot) 1-101 (1-101)
Uniprot ID A1B482 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain UA heme  
auth_asym_id k
Residue indices (Uniprot) 11-554 (1-558)
Uniprot ID A1B3D7 ￫UniprotKB
S-S bonds 66:80
label_asym_ids of heme YD ,  AE
Available structure PDB
Chain V  
auth_asym_id K1
Residue indices (Uniprot) 1-101 (1-101)
Uniprot ID A1B482 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain VA  
auth_asym_id l
Residue indices (Uniprot) 30-281 (1-298)
Uniprot ID A1BA41 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id L
Residue indices (Uniprot) 1-703 (1-703)
Structural gaps Exists
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B481 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain WA  
auth_asym_id m
Residue indices (Uniprot) 2-274 (1-274)
Uniprot ID A1BA37 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id L1
Residue indices (Uniprot) 1-703 (1-703)
Structural gaps Exists
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B481 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain XA  
auth_asym_id n
Residue indices (Uniprot) 8-50 (1-66)
Uniprot ID A1AZ52 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id M
Residue indices (Uniprot) 1-503 (1-513)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B480 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain YA  
auth_asym_id o
Residue indices (Uniprot) 2-55 (1-176)
Missing residues 37SER-46HIS
Structural gaps Exists
Uniprot ID A1B311 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain Z  
auth_asym_id M1
Residue indices (Uniprot) 1-503 (1-513)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID A1B480 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain ZA  
auth_asym_id p
Residue indices (Uniprot) 2-55 (1-176)
Missing residues 37SER-46HIS
Structural gaps Exists
Uniprot ID A1B311 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å