Danish

PDB ID: pdb_00009is4

Cryo-EM structure of a TEF30-associated intermediate C2S-type PSII-LHCII supercomplex from Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2024-07-16

Number of assemblies: 1

Assembly ID: 0 (author_and_software_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	38
label_asym_ids of protein	38 chains (4 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme	JI UC
label_asym_ids of the others	show AB (CLA), AC (BCR), AD (CHL), AE (CHL), AF (LUT), AG (FE2), AH (CLA), AI (PHO), AJ (BCR), BB (CLA), BC (BCR), BD (CHL), BE (CHL), BF (NEX), BG (CLA), BH (BCR), BI (CLA), CB (CLA), CC (BCR), CD (CHL), CE (CLA), CF (LHG), CG (CLA), CH (BCR), CI (CLA), DB (CLA), DC (DGD), DD (CHL), DE (CLA), DF (LMU), DG (PHO), DH (BCR), DI (BCR), EB (CLA), EC (DGD), ED (CLA), EE (CLA), EF (BCR), EG (CLA), EH (LMG), EI (PL9), FB (CLA), FC (DGD), FD (CLA), FE (CLA), FF (LMG), FG (BCR), FH (LHG), FI (LHG), GB (CLA), GC (LMG), GD (CLA), GE (CLA), GF (DGD), GG (SQD), GH (CLA), GI (LHG), HB (CLA), HC (LHG), HD (CLA), HE (LUT), HF (DGD), HG (LMG), HH (CLA), HI (LMG), IB (CLA), IC (LMU), ID (CLA), IE (LUT), IF (XAT), IG (BCT), IH (CLA), II (LMG), JB (BCR), JC (LMU), JD (LUT), JE (NEX), JF (CHL), JG (LHG), JH (CLA), KB (BCR), KC (CLA), KD (LUT), KE (LHG), KF (CLA), KG (LHG), KH (CLA), KI (BCR), LB (LMG), LC (PHO), LD (NEX), LE (CHL), LF (CLA), LG (CLA), LH (CLA), LI (BCR), MA (FE2), MB (LHG), MC (BCT), MD (LHG), ME (CLA), MF (CLA), MG (CLA), MH (CLA), MI (LHG), NA (CLA), NB (CLA), NC (CLA), ND (CHL), NE (CLA), NF (CHL), NG (CLA), NH (CLA), NI (CLA), OA (CLA), OB (CLA), OC (CLA), OD (XAT), OE (CLA), OF (CHL), OG (CLA), OH (CLA), OI (CLA), PA (PHO), PB (CLA), PC (BCR), PD (BCR), PE (CLA), PF (CHL), PG (CLA), PH (CLA), PI (CLA), QA (CLA), QB (CLA), QC (PL9), QD (LMG), QE (CHL), QF (CHL), QG (CLA), QH (CLA), QI (CHL), RA (BCR), RB (CLA), RC (LHG), RD (LHG), RE (CHL), RF (CLA), RG (CLA), RH (CLA), RI (CHL), SA (SQD), SB (CLA), SC (LHG), SD (XAT), SE (CHL), SF (CLA), SG (CLA), SH (CLA), SI (CHL), TA (CLA), TB (CLA), TC (LMG), TD (CHL), TE (CLA), TF (CLA), TG (CLA), TH (BCR), TI (CLA), UA (CLA), UB (CLA), UD (CLA), UE (CLA), UF (CLA), UG (CLA), UH (DGD), UI (CLA), VA (CLA), VB (CLA), VC (CHL), VD (CLA), VE (CLA), VF (CLA), VG (CLA), VH (DGD), VI (XAT), WA (CLA), WB (CLA), WC (CLA), WD (CLA), WE (CLA), WF (LUT), WG (CLA), WH (DGD), WI (NEX), XA (CLA), XB (CLA), XC (CLA), XD (CHL), XE (CLA), XF (LUT), XG (CLA), XH (LMG), XI (BCR), YA (CLA), YB (CLA), YC (CLA), YD (CHL), YE (CLA), YF (NEX), YG (CLA), YH (LMU), YI (SQD), ZA (CLA), ZB (CLA), ZC (CHL), ZD (CHL), ZE (LUT), ZF (LHG), ZG (CLA), ZH (CLA), ZI (BCR)

Each chain information

Showing all 38 chains (4 with heme). Show only chains with heme

Chain A
auth_asym_id	1
Residue indices (Uniprot)	167-325 (167-325)
Uniprot ID	A0A2K3E6S5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA heme
auth_asym_id	e
Residue indices (Uniprot)	12-82 (8-82)
Uniprot ID	P48268 ￫UniprotKB
label_asym_ids of heme	JI
Available structure	PDB

Chain B
auth_asym_id	A
Residue indices (Uniprot)	10-344 (10-344)
Structural gaps	Exists
Uniprot ID	P07753 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA heme
auth_asym_id	f
Residue indices (Uniprot)	14-44 (14-44)
Uniprot ID	Q08363 ￫UniprotKB
label_asym_ids of heme	JI
Available structure	PDB

Chain C
auth_asym_id	B
Residue indices (Uniprot)	2-481 (2-482)
Uniprot ID	P37255 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	h
Residue indices (Uniprot)	18-85 (18-86)
Uniprot ID	P22666 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	C
Residue indices (Uniprot)	13-461 (13-461)
Uniprot ID	P10898 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	i
Residue indices (Uniprot)	1-34 (1-35)
Uniprot ID	P59763 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E
auth_asym_id	D
Residue indices (Uniprot)	5-352 (2-352)
Uniprot ID	P06007 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (10-46)
Uniprot ID	P18263 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	E
Residue indices (Uniprot)	8-82 (8-82)
Uniprot ID	P48268 ￫UniprotKB
label_asym_ids of heme	UC
Available structure	PDB

Chain FA
auth_asym_id	l
Residue indices (Uniprot)	2-38 (2-38)
Uniprot ID	P32974 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G heme
auth_asym_id	F
Residue indices (Uniprot)	14-44 (14-44)
Uniprot ID	Q08363 ￫UniprotKB
label_asym_ids of heme	UC
Available structure	PDB

Chain GA
auth_asym_id	m
Residue indices (Uniprot)	4-33 (3-33)
Uniprot ID	P92277 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	G
Residue indices (Uniprot)	31-249 (31-249)
Uniprot ID	Q93WE0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	r
Residue indices (Uniprot)	59-259 (59-259)
Structural gaps	Exists
Uniprot ID	Q93WD2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	H
Residue indices (Uniprot)	19-86 (18-86)
Uniprot ID	P22666 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	t
Residue indices (Uniprot)	1-27 (1-30)
Uniprot ID	P37256 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-35)
Uniprot ID	P59763 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	v
Residue indices (Uniprot)	2-33 (2-33)
Uniprot ID	P50370 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	K
Residue indices (Uniprot)	10-46 (10-46)
Uniprot ID	P18263 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	x
Residue indices (Uniprot)	64-95 (64-95)
Uniprot ID	A8I846 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	L
Residue indices (Uniprot)	3-38 (2-38)
Uniprot ID	P32974 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-61)
Uniprot ID	P92276 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	M
Residue indices (Uniprot)	3-32 (3-33)
Uniprot ID	P92277 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	N
Residue indices (Uniprot)	39-257 (39-257)
Uniprot ID	Q93WL4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	O
Residue indices (Uniprot)	52-291 (52-291)
Structural gaps	Exists
Uniprot ID	P12853 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	S
Residue indices (Uniprot)	34-283 (34-283)
Uniprot ID	Q9FEK6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	T
Residue indices (Uniprot)	1-30 (1-30)
Uniprot ID	P37256 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	V
Residue indices (Uniprot)	2-33 (2-33)
Uniprot ID	P50370 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	W
Residue indices (Uniprot)	60-115 (60-115)
Uniprot ID	Q9SPI9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	X
Residue indices (Uniprot)	64-95 (64-95)
Uniprot ID	A8I846 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	Y
Residue indices (Uniprot)	37-256 (37-256)
Uniprot ID	Q93VE0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	Z
Residue indices (Uniprot)	1-61 (1-61)
Uniprot ID	P92276 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	a
Residue indices (Uniprot)	11-335 (10-344)
Structural gaps	Exists
Uniprot ID	P07753 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	b
Residue indices (Uniprot)	2-482 (2-482)
Uniprot ID	P37255 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	c
Residue indices (Uniprot)	13-461 (13-461)
Missing residues	313GLY-323THR
Structural gaps	Exists
Uniprot ID	P10898 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain Z
auth_asym_id	d
Residue indices (Uniprot)	2-352 (2-352)
Missing residues	226GLY-239GLN
Structural gaps	Exists
Uniprot ID	P06007 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.10 Å