Danish

PDB ID: pdb_00009ltv

Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex with incomplete LH1 ring(State 2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposition date: 2025-02-06

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	PDB
Oligomeric count	33
label_asym_ids of protein	33 chains (1 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme	BB CB DB
label_asym_ids of the others	show AB (BCL), AC (SPN), BC (SPN), CC (BCL), DC (SPN), EB (BCL), EC (SPN), FB (U10), FC (BCL), GB (BCL), GC (SPN), HA (BCL), HB (U10), HC (BCL), IA (SPN), IB (BPH), IC (SPN), JA (BCL), JB (FE), JC (BCL), KA (SPN), KB (BCL), KC (BCL), LA (SPN), LB (U10), LC (SPN), MA (BCL), MB (BPH), MC (BCL), NA (BCL), NB (BCL), NC (SPN), OA (SPN), OB (BPH), OC (BCL), PA (BCL), PB (SPN), PC (BCL), QA (SPN), QB (BCL), QC (SPN), RA (BCL), RB (SPN), RC (SPN), SA (SPN), SB (BCL), SC (BCL), TA (SPN), TB (SPN), TC (BCL), UA (BCL), UB (BCL), UC (SPN), VA (BCL), VB (SPN), VC (BCL), WA (SPN), WB (BCL), WC (SPN), XA (BCL), XB (SPN), XC (BCL), YA (SPN), YB (BCL), ZA (SPN), ZB (BCL)

Each chain information

Showing all 33 chains (1 with heme). Show only chains with heme

Chain A
auth_asym_id	0
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA
auth_asym_id	l
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	1
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	m
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	2
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	n
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	3
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	o
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E
auth_asym_id	4
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	p
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F
auth_asym_id	5
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain FA
auth_asym_id	w
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G
auth_asym_id	6
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	x
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	7
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	8
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	9
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	A
Residue indices (Uniprot)	7-82 (7-87)
Uniprot ID	A8LIU2 ￫UniprotKB
S-S bonds	10:59
label_asym_ids of heme	None
Available structure	PDB

Chain L heme
auth_asym_id	C
Residue indices (Uniprot)	4-370 (4-360)
Mutations (UniProt numbering)	W40M
Uniprot ID	A8LQ18 ￫UniprotKB
label_asym_ids of heme	BB , CB , DB
Available structure	PDB

Chain M
auth_asym_id	H
Residue indices (Uniprot)	2-256 (2-256)
Mutations (UniProt numbering)	D44E, I181L, E197Q
Uniprot ID	A8LQ33 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	L
Residue indices (Uniprot)	2-274 (2-274)
Mutations (UniProt numbering)	I176L
Uniprot ID	A8LQ16 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	M
Residue indices (Uniprot)	2-326 (2-326)
Mutations (UniProt numbering)	S134T
Uniprot ID	A8LQ17 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	a
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	b
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	c
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	d
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	e
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	f
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	g
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	h
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	i
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	j
Residue indices (Uniprot)	5-48 (6-49)
Uniprot ID	A8LQ14 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	k
Residue indices (Uniprot)	1-51 (1-51)
Uniprot ID	A8LQ15 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB