Danish
PDB ID:  pdb_00009m5a
  • cryo-EM structure of PSII D1-V185T from Thermosynechococcus vestitus BP-1
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2025-03-05
Number of assemblies:  1
Assembly ID:  0  (author_defined_assembly)    
Structural data modeled
Oligomeric count 38
label_asym_ids of protein
38 chains (6 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme GD HH SG WD
label_asym_ids of the others
show AB (CLA), AC (CLA), AD (LHG), AE (FE2), AF (CLA), AG (DGD), AH (BCR), BB (CLA), BC (CLA), BD (LHG), BE (CL), BF (CLA), BG (LMG), BH (LHG), CB (CLA), CC (CLA), CD (LMG), CE (CL), CF (BCR), CG (LMG), CH (LMT), DB (CLA), DC (CLA), DD (UNL), DE (CLA), DF (BCR), DG (PHO), DH (SQD), EB (CLA), EC (CLA), ED (UNL), EE (CLA), EF (BCR), EG (CLA), EH (LMT), FB (CLA), FC (CLA), FD (SQD), FE (PHO), FF (LMG), FG (UNL), FH (BCR), GB (CLA), GC (CLA), GE (CLA), GF (LMT), GG (BCT), GH (UNL), HB (CLA), HC (CLA), HD (RRX), HE (BCR), HF (UNL), HG (CLA), IB (CLA), IC (CLA), ID (DGD), IE (LMG), IF (SQD), IG (CLA), IH (UNL), JB (CLA), JC (CLA), JD (UNL), JE (PL9), JF (CLA), JG (BCR), JH (BCR), KB (CLA), KC (BCR), KD (UNL), KE (SQD), KF (CLA), KG (PL9), KH (LHG), LB (CLA), LC (BCR), LD (MG), LE (UNL), LF (CLA), LG (LHG), LH (UNL), MA (OEX), MB (CLA), MC (DGD), MD (LMT), ME (CLA), MF (CLA), MG (LHG), MH (CA), NA (FE2), NB (CLA), NC (DGD), ND (UNL), NE (CLA), NF (CLA), NG (LHG), NH (LHG), OA (CL), OB (CLA), OC (DGD), OD (BCR), OE (CLA), OF (CLA), OG (LMG), OH (UNL), PA (CL), PB (BCR), PC (LMG), PD (LHG), PE (CLA), PF (CLA), PG (UNL), PH (CA), QA (CLA), QB (BCR), QC (LMG), QD (LMT), QE (CLA), QF (CLA), QG (UNL), RA (CLA), RB (BCR), RC (PHO), RD (BCR), RE (CLA), RF (CLA), RG (SQD), SA (PHO), SB (LMG), SC (CLA), SD (UNL), SE (CLA), SF (CLA), TA (CLA), TB (LMT), TC (UNL), TD (SQD), TE (CLA), TF (CLA), TG (RRX), UA (BCR), UB (UNL), UC (BCT), UD (LMT), UE (CLA), UF (CLA), UG (DGD), VA (LMG), VB (LMT), VC (CLA), VD (LMT), VE (CLA), VF (CLA), VG (UNL), WA (PL9), WB (SQD), WC (CLA), WE (CLA), WF (BCR), WG (UNL), XA (SQD), XB (CLA), XC (BCR), XD (UNL), XE (CLA), XF (BCR), XG (MG), YA (UNL), YB (CLA), YC (PL9), YD (BCR), YE (CLA), YF (DGD), YG (LMT), ZA (CLA), ZB (CLA), ZC (LHG), ZD (OEX), ZE (CLA), ZF (DGD), ZG (UNL)
Each chain information

Showing 6 chains with heme of 38. Show all chains

Chain DA heme  
auth_asym_id v
Residue indices (Uniprot) 1-137 (1-163)
Uniprot ID P0A386 ￫UniprotKB
label_asym_ids of heme HH
Available structure PDB
Chain E heme  
auth_asym_id F
Residue indices (Uniprot) 13-45 (1-45)
Uniprot ID Q8DIN9 ￫UniprotKB
label_asym_ids of heme GD
Available structure PDB
Chain GA heme  
auth_asym_id E
Residue indices (Uniprot) 4-82 (1-84)
Missing residues 59GLU-59GLU
Structural gaps Exists
Uniprot ID Q8DIP0 ￫UniprotKB
label_asym_ids of heme GD
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain JA heme  
auth_asym_id e
Residue indices (Uniprot) 4-82 (1-84)
Missing residues 59GLU-59GLU
Structural gaps Exists
Uniprot ID Q8DIP0 ￫UniprotKB
label_asym_ids of heme SG
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain N heme  
auth_asym_id V
Residue indices (Uniprot) 1-137 (1-163)
Uniprot ID P0A386 ￫UniprotKB
label_asym_ids of heme WD
Available structure PDB
Chain U heme  
auth_asym_id f
Residue indices (Uniprot) 13-45 (1-45)
Uniprot ID Q8DIN9 ￫UniprotKB
label_asym_ids of heme SG
Available structure PDB