PDB ID: pdb_00009nb8
- Cryo-EM structure of the CD163/HpSPHb complex
- Experimental method: ELECTRON MICROSCOPY
- Resolution: 4 Å
- Deposition date: 2025-02-13
Number of assemblies: 1
| Structural data | modeled |
|---|---|
| Oligomeric count | 6 |
| label_asym_ids of protein | |
| label_asym_ids of heme | |
| label_asym_ids of the others |
AA (CA  CA
), CA (OXY OXY
), EA (OXYOXY
), G (CACA
), H (CACA
), I (CACA
), J (CACA
), K (CACA
), L (CACA
), M (CACA
), N (CACA
), O (CACA
), P (CACA
), Q (CACA
), R (CACA
), S (CACA
), T (CACA
), U (CACA
), V (CACA
), W (CACA
), X (CACA
), Y (CACA
), Z (CACA
)
|
Each chain information
Showing all 6 chains (1 with heme). Show only chains with heme
| auth_asym_id | A |
|---|---|
| Residue indices (Uniprot) | 156-1030 (42-1045) |
| Missing residues | 694ASN-710ALA |
| Structural gaps | Exists |
| Uniprot ID | Q86VB7 ￫UniprotKB |
| S-S bonds | 168:202,184:248,197:258,228:238,275:309,291:355,304:365,335:345,382:416,398:462,411:472,442:452,487:521,503:567,516:577,547:557,592:626,608:672,621:682,652:662,693:713,728:762,744:808,757:818,788:798,835:869,864:925,895:905,938:972,954:1018,967:1028,998:1008 |
| label_asym_ids of heme | None |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.18 Å |
| auth_asym_id | B |
|---|---|
| Residue indices (Uniprot) | 263-1030 (42-1045) |
| Missing residues | 694ASN-710ALA |
| Structural gaps | Exists |
| Uniprot ID | Q86VB7 ￫UniprotKB |
| S-S bonds | 275:309,291:355,304:365,335:345,382:416,398:462,411:472,442:452,487:521,503:567,516:577,547:557,592:626,608:672,621:682,652:662,693:713,728:762,744:808,757:818,788:798,835:869,864:925,895:905,938:972,954:1018,967:1028,998:1008 |
| label_asym_ids of heme | None |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.15 Å |
| auth_asym_id | C |
|---|---|
| Residue indices (Uniprot) | 263-1030 (42-1045) |
| Missing residues | 694ASN-710ALA |
| Structural gaps | Exists |
| Uniprot ID | Q86VB7 ￫UniprotKB |
| S-S bonds | 275:309,291:355,304:365,335:345,382:416,398:462,411:472,442:452,487:521,503:567,516:577,547:557,592:626,608:672,621:682,652:662,693:713,728:762,744:808,757:818,788:798,835:869,864:925,895:905,938:972,954:1018,967:1028,998:1008 |
| label_asym_ids of heme | None |
| Available structure | PDB and Modeled |
| RMSD of experimental residues after energy minimization | 0.16 Å |
| auth_asym_id | D |
|---|---|
| Residue indices (Uniprot) | 2-142 (1-142) |
| Uniprot ID | P69905 ￫UniprotKB |
| label_asym_ids of heme | BA |
| Available structure | PDB |
| auth_asym_id | E |
|---|---|
| Residue indices (Uniprot) | 3-146 (1-147) |
| Uniprot ID | P68871 ￫UniprotKB |
| label_asym_ids of heme | None |
| Available structure | PDB |
| auth_asym_id | F |
|---|---|
| Residue indices (Uniprot) | 89-347 (147-406) |
| Mutations (UniProt numbering) | |
| Uniprot ID | P00738 ￫UniprotKB |
| S-S bonds | 90:207,250:281,292:322 |
| label_asym_ids of heme | None |
| Available structure | PDB |