Danish

PDB ID: pdb_00009w5b

cryo-EM structure of PSII D1-S264V from Thermosynechococcus vestitus BP-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.96 Å
Deposition date: 2025-08-01

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	PDB
Oligomeric count	38
label_asym_ids of protein	38 chains (6 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme	BH ED NG TD
label_asym_ids of the others	show AB (LHG), AC (CLA), AD (UNL), AE (CLA), AF (BCR), AG (CLA), AH (BCR), BB (CLA), BC (CLA), BD (UNL), BE (CLA), BF (BCR), BG (BCR), CB (CLA), CC (CLA), CD (UNL), CE (CLA), CF (LMG), CG (PHO), CH (RRX), DB (CLA), DC (CLA), DD (SQD), DE (BCR), DF (UNL), DG (PHO), DH (UNL), EB (CLA), EC (CLA), EE (SQD), EF (BCR), EG (CLA), FB (CLA), FC (CLA), FD (DGD), FE (PL9), FF (CLA), FG (CLA), GB (CLA), GC (CLA), GD (UNL), GE (UNL), GF (LHG), GG (BCR), HB (CLA), HC (CLA), HD (UNL), HE (CLA), HF (UNL), HG (PL9), IB (CLA), IC (CLA), ID (LMG), IE (BCT), IF (LMG), IG (LHG), JB (CLA), JC (CLA), JD (LMT), JE (LHG), JF (CLA), JG (UNL), KB (CLA), KC (CLA), KD (UNL), KE (LHG), KF (CLA), KG (UNL), LB (CLA), LC (CLA), LD (BCR), LE (CLA), LF (CLA), LG (UNL), MA (OEX), MB (CLA), MC (BCR), MD (BCR), ME (CLA), MF (CLA), MG (SQD), NA (FE2), NB (CLA), NC (DGD), ND (LHG), NE (CLA), NF (CLA), OA (CL), OB (CLA), OC (DGD), OD (LMT), OE (CLA), OF (CLA), OG (DGD), PA (CL), PB (CLA), PC (UNL), PD (LMT), PE (CLA), PF (CLA), PG (UNL), QA (CLA), QB (BCR), QC (DGD), QD (CA), QE (CLA), QF (CLA), QG (UNL), RA (CLA), RB (BCR), RC (CLA), RD (UNL), RE (CLA), RF (CLA), RG (LMG), SA (CLA), SB (LMG), SC (BCR), SD (BCR), SE (CLA), SF (CLA), SG (LMT), TA (BCR), TB (UNL), TC (PHO), TE (CLA), TF (CLA), TG (UNL), UA (SQD), UB (BCR), UC (PHO), UD (RRX), UE (CLA), UF (CLA), UG (BCR), VA (PL9), VB (CLA), VC (CLA), VD (UNL), VE (CLA), VF (BCR), VG (BCR), WA (UNL), WB (LHG), WC (CLA), WD (OEX), WE (CLA), WF (DGD), WG (LHG), XA (CLA), XB (LMT), XC (BCR), XD (FE2), XE (CLA), XF (DGD), XG (LMT), YA (BCT), YB (UNL), YC (PL9), YD (CL), YE (CLA), YF (UNL), YG (CA), ZA (LHG), ZB (LMG), ZC (LHG), ZD (CL), ZE (CLA), ZF (DGD), ZG (UNL)

Each chain information

Showing all 38 chains (6 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	12-344 (1-360)
Mutations (UniProt numbering)	S264V
Uniprot ID	Q8DIV4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA
auth_asym_id	i
Residue indices (Uniprot)	1-36 (1-38)
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-505 (1-510)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	j
Residue indices (Uniprot)	7-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	24-473 (1-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (1-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	12-352 (1-352)
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	l
Residue indices (Uniprot)	2-37 (1-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	4-83 (1-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	ED
Available structure	PDB

Chain EA
auth_asym_id	m
Residue indices (Uniprot)	1-34 (1-36)
Uniprot ID	Q8DHA7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	13-45 (1-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	ED
Available structure	PDB

Chain FA
auth_asym_id	o
Residue indices (Uniprot)	4-245 (1-272)
Uniprot ID	P0A431 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G
auth_asym_id	H
Residue indices (Uniprot)	2-62 (1-66)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	t
Residue indices (Uniprot)	1-29 (1-32)
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-36 (1-38)
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	u
Residue indices (Uniprot)	8-104 (1-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	J
Residue indices (Uniprot)	7-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA heme
auth_asym_id	v
Residue indices (Uniprot)	1-137 (1-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	BH
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	10-46 (1-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	x
Residue indices (Uniprot)	3-38 (1-41)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	2-37 (1-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	y
Residue indices (Uniprot)	18-46 (1-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	M
Residue indices (Uniprot)	1-34 (1-36)
Uniprot ID	Q8DHA7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	O
Residue indices (Uniprot)	4-245 (1-272)
Uniprot ID	P0A431 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	T
Residue indices (Uniprot)	1-29 (1-32)
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	U
Residue indices (Uniprot)	8-104 (1-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P heme
auth_asym_id	V
Residue indices (Uniprot)	1-137 (1-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	TD
Available structure	PDB

Chain Q
auth_asym_id	X
Residue indices (Uniprot)	3-38 (1-41)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	Y
Residue indices (Uniprot)	18-46 (1-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	Z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	a
Residue indices (Uniprot)	12-344 (1-360)
Mutations (UniProt numbering)	S264V
Uniprot ID	Q8DIV4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	b
Residue indices (Uniprot)	2-505 (1-510)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	c
Residue indices (Uniprot)	24-473 (1-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	d
Residue indices (Uniprot)	12-352 (1-352)
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X heme
auth_asym_id	e
Residue indices (Uniprot)	4-83 (1-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	NG
Available structure	PDB

Chain Y heme
auth_asym_id	f
Residue indices (Uniprot)	13-45 (1-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	NG
Available structure	PDB

Chain Z
auth_asym_id	h
Residue indices (Uniprot)	2-62 (1-66)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB