Danish
PDB ID:  pdb_00009wqv
  • Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2025-09-11
Number of assemblies:  1
Assembly ID:  0  (author_defined_assembly)    
Structural data modeled
Oligomeric count 37
label_asym_ids of protein
37 chains (1 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
label_asym_ids of heme NB OB PB
label_asym_ids of the others
show AB (LMT), AC (UNL), AD (LMT), AE (UNL), BB (BCL), BC (BCL), BD (LMT), BE (BCL), CB (UNL), CC (SPO), CD (BCL), CE (SPO), DB (BCL), DC (A1E), DD (BCL), DE (A1E), EB (SPO), EC (LMT), ED (FE), EE (BCL), FB (A1E), FC (PGV), FD (U10), FE (UNL), GB (LMT), GC (BCL), GD (BCL), GE (BCL), HB (BCL), HC (UNL), HD (BPH), HE (SPO), IB (SPO), IC (PGV), ID (U10), IE (A1E), JB (A1E), JC (PGV), JD (SPO), JE (BCL), KB (PGV), KC (PGV), KD (PGV), KE (UNL), LA (BCL), LB (BCL), LC (PGV), LD (PGV), LE (BCL), MA (UNL), MB (UNL), MC (PGV), MD (PGV), ME (SPO), NA (BCL), NC (BCL), ND (U10), NE (A1E), OA (BCL), OC (SPO), OD (PGV), OE (SPO), PA (BCL), PC (A1E), PD (MG), PE (BCL), QA (SPO), QB (MG), QC (BCL), QD (LMT), QE (UNL), RA (BCL), RB (MG), RC (UNL), RD (LMT), RE (BCL), SA (BCL), SB (FE), SC (BCL), SD (MG), SE (A1E), TA (SPO), TB (LMT), TC (SPO), TD (BCL), TE (BCL), UA (A1E), UB (BCL), UC (A1E), UD (UNL), UE (BCL), VA (BCL), VB (SPO), VC (LMT), VD (BCL), VE (SPO), WA (UNL), WB (A1E), WC (BCL), WD (SPO), WE (A1E), XA (BCL), XB (PGV), XC (BPH), XD (A1E), XE (BCL), YA (SPO), YB (UNL), YC (U10), YD (LMT), ZA (A1E), ZB (BCL), ZC (PGV), ZD (BCL)
Each chain information

Showing all 37 chains (1 with heme). Show only chains with heme

Chain A  
auth_asym_id 0
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain AA  
auth_asym_id Q
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain B  
auth_asym_id 1
Residue indices (Uniprot) 3-51 (1-54)
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BA  
auth_asym_id R
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id 2
Residue indices (Uniprot) 8-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain CA  
auth_asym_id S
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain D  
auth_asym_id 3
Residue indices (Uniprot) 1-46 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å
Chain DA  
auth_asym_id T
Residue indices (Uniprot) 5-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id 4
Residue indices (Uniprot) 6-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain EA  
auth_asym_id U
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain F  
auth_asym_id 5
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain FA  
auth_asym_id V
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id 6
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain GA  
auth_asym_id W
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain H  
auth_asym_id 7
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain HA  
auth_asym_id X
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id 8
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain IA  
auth_asym_id Y
Residue indices (Uniprot) 3-53 (1-54)
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J  
auth_asym_id 9
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain JA  
auth_asym_id Z
Residue indices (Uniprot) 9-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id A
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain KA  
auth_asym_id a
Residue indices (Uniprot) 2-111 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id B
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M heme  
auth_asym_id C
Residue indices (Uniprot) 3-354 (1-356)
Uniprot ID Q9WXE3 ￫UniprotKB
label_asym_ids of heme NB ,  OB ,  PB
Available structure PDB
Chain N  
auth_asym_id D
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.18 Å
Chain O  
auth_asym_id E
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain P  
auth_asym_id F
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain Q  
auth_asym_id G
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id H
Residue indices (Uniprot) 1-260 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id I
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.19 Å
Chain T  
auth_asym_id J
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain U  
auth_asym_id K
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain V  
auth_asym_id L
Residue indices (Uniprot) 2-284 (1-284)
Uniprot ID Q9WXE1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id M
Residue indices (Uniprot) 2-318 (1-321)
Uniprot ID Q9WXE2 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id N
Residue indices (Uniprot) 4-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id O
Residue indices (Uniprot) 1-53 (1-54)
Missing residues 1MET-1MET
Nonstandard amino acids FME Structure of FMEFME
Uniprot ID Q9WXE0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain Z  
auth_asym_id P
Residue indices (Uniprot) 3-48 (1-48)
Uniprot ID Q9WXD9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB