Danish
Uniprot ID:  Q9HXS8
  • Protein: Spermidine dehydrogenase, SpdH
  • Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
  • Length: 620
  • Sequence:
    • MTISRRDFLNGVALTIAAGLTPAEILRAAPGGRYYPPALTGLRGSHPGAFEVAHQMGWEKKTFDVDHLPIEEEYDLVVVGGGISGLAAAWFYRERHPAARILVIENHDDFGGHAKRNEFQAGGRTILGYGGSESLQSPNALYSEDAKHLLKRLGVELKRFETAFDTDFYPGLGLSRAVFFDKASFGVDKLVSGDPTPMVADEVPRDRLNARSWRAFIGDFPLSREDREALIALYESPRDYLAGKSVEEKETYLAKTSYRDYLLKNVGLSETSVKYFQGRSNDFSALGADALPAADAYAAGFPGFDALGLPQPSEEAQAEMDEPYIYHFPDGNASLARLMVRDLIPAVAPGRGMEDIVMARFDYSKLDLAGHPVRLRLNSTAVSVRNRAGGVDVGYSRAGRLHRVRGKHCVMACYNMMVPYLLRDLSEEQAHALSQNVKFPLVYTKVLLRNWQAWKTLGIHEIYAPTLPYSRIKLDFPVDLGSYRHPRDPRQPIGVHMVYVPTTPNAGMDARTQARVGRSKLYAMSFEQLEKDIRDQLQAMLGPAGFDHRRDITGITVNRWSHGYSYFMNTLYDDEAESEALMELARSKVGNVAIANSDAAWDAYAHAAIDQAVRAVRELG
Exclude chains with
Mutations (vs. UniProt)
Clear
Number of chains:  10
PDB ID:  pdb_00007d9f , Chain A 
Resolution 1.85 Å
Residue indices (Uniprot), coverage 29-619 (1-620), 1.00
Mutations (UniProt numbering) None
Insertions None
Deletions None
Sequence identity to UniProt 1.0000
auth_asym_id A
Missing residues 56MET-56MET:198MET-198MET:320MET-320MET:339MET-339MET:353MET-353MET:358MET-358MET:411MET-411MET:416MET-417MET:497MET-497MET:508MET-508MET:524MET-524MET:540MET-540MET:568MET-568MET:582MET-582MET
Nonstandard amino acids MSE Structure of MSEMSE
label_asym_ids of heme D
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.15 Å
PDB ID:  pdb_00007d9f , Chain B 
Resolution 1.85 Å
Residue indices (Uniprot), coverage 33-619 (1-620), 1.00
Mutations (UniProt numbering) None
Insertions None
Deletions None
Sequence identity to UniProt 1.0000
auth_asym_id B
Missing residues 56MET-56MET:198MET-198MET:320MET-320MET:339MET-339MET:353MET-353MET:358MET-358MET:411MET-411MET:416MET-417MET:497MET-497MET:508MET-508MET:524MET-524MET:540MET-540MET:568MET-568MET:582MET-582MET
Nonstandard amino acids MSE Structure of MSEMSE
label_asym_ids of heme J
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 1.15 Å
PDB ID:  pdb_00007d9i , Chain A 
Resolution 2.10 Å
Residue indices (Uniprot), coverage 34-619 (1-620), 1.00
Difference from Uniprot sequence engineered mutation
Mutations (UniProt numbering) D282A
Insertions None
Deletions None
Sequence identity to UniProt 0.9984
auth_asym_id A
Missing residues 313SER-319GLU
Structural gaps Exists
label_asym_ids of heme D
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
PDB ID:  pdb_00007d9i , Chain B 
Resolution 2.10 Å
Residue indices (Uniprot), coverage 34-620 (1-620), 1.00
Difference from Uniprot sequence engineered mutation
Mutations (UniProt numbering) D282A
Insertions None
Deletions None
Sequence identity to UniProt 0.9984
auth_asym_id B
label_asym_ids of heme F
Available structure PDB
PDB ID:  pdb_00007d9j , Chain A 
Resolution 2.19 Å
Residue indices (Uniprot), coverage 34-619 (1-620), 1.00
Difference from Uniprot sequence engineered mutation
Mutations (UniProt numbering) Y443A
Insertions None
Deletions None
Sequence identity to UniProt 0.9984
auth_asym_id A
Missing residues 312PRO-320MET
Structural gaps Exists
label_asym_ids of heme D
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
PDB ID:  pdb_00007d9j , Chain B 
Resolution 2.19 Å
Residue indices (Uniprot), coverage 34-620 (1-620), 1.00
Difference from Uniprot sequence engineered mutation
Mutations (UniProt numbering) Y443A
Insertions None
Deletions None
Sequence identity to UniProt 0.9984
auth_asym_id B
label_asym_ids of heme G
Available structure PDB
PDB ID:  pdb_00007d9h , Chain A 
Resolution 2.31 Å
Residue indices (Uniprot), coverage 34-619 (34-620), 0.95
Mutations (UniProt numbering) None
Insertions None
Deletions M1-R33
Sequence identity to UniProt 1.0000
auth_asym_id A
Missing residues 138PRO-141LEU:311GLN-320MET
Structural gaps Exists
label_asym_ids of heme D
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
PDB ID:  pdb_00007d9h , Chain B 
Resolution 2.31 Å
Residue indices (Uniprot), coverage 34-620 (34-620), 0.95
Mutations (UniProt numbering) None
Insertions None
Deletions M1-R33
Sequence identity to UniProt 1.0000
auth_asym_id B
label_asym_ids of heme G
Available structure PDB
PDB ID:  pdb_00007d9g , Chain A 
Resolution 2.40 Å
Residue indices (Uniprot), coverage 33-619 (1-620), 1.00
Mutations (UniProt numbering) None
Insertions None
Deletions None
Sequence identity to UniProt 1.0000
auth_asym_id A
Missing residues 312PRO-314GLU
Structural gaps Exists
label_asym_ids of heme D
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
PDB ID:  pdb_00007d9g , Chain B 
Resolution 2.40 Å
Residue indices (Uniprot), coverage 32-619 (1-620), 1.00
Mutations (UniProt numbering) None
Insertions None
Deletions None
Sequence identity to UniProt 1.0000
auth_asym_id B
label_asym_ids of heme F
Available structure PDB