Danish
PDB ID:  pdb_000031fd
  • Photosystem II from Arabidopsis thaliana following high light and high temperature treatment
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2026-06-01
Number of assemblies:  1
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 30
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (BCRStructure of BCRBCR ), AC (PHOStructure of PHOPHO ), AD (CLAStructure of CLACLA ), AE (CLAStructure of CLACLA ), BB (CLAStructure of CLACLA ), BC (BCRStructure of BCRBCR ), BD (CLAStructure of CLACLA ), BE (CLAStructure of CLACLA ), CB (CLAStructure of CLACLA ), CC (LHGStructure of LHGLHG ), CD (CLAStructure of CLACLA ), CE (CLAStructure of CLACLA ), DB (CLAStructure of CLACLA ), DC (CLAStructure of CLACLA ), DD (CLAStructure of CLACLA ), DE (CLAStructure of CLACLA ), EA (OEXStructure of OEXOEX ), EB (CLAStructure of CLACLA ), EC (CLAStructure of CLACLA ), ED (CLAStructure of CLACLA ), EE (DGDStructure of DGDDGD ), FA (CLStructure of CLCL ), FB (CLAStructure of CLACLA ), FC (PL9Structure of PL9PL9 ), FD (BCRStructure of BCRBCR ), FE (CLAStructure of CLACLA ), GA (CLAStructure of CLACLA ), GB (CLAStructure of CLACLA ), GC (LMGStructure of LMGLMG ), GD (CLAStructure of CLACLA ), GE (CLAStructure of CLACLA ), HA (CLAStructure of CLACLA ), HB (DGDStructure of DGDDGD ), HC (LHGStructure of LHGLHG ), HD (CLAStructure of CLACLA ), HE (DGDStructure of DGDDGD ), IA (CLAStructure of CLACLA ), IB (CLStructure of CLCL ), ID (CLAStructure of CLACLA ), IE (PHOStructure of PHOPHO ), JA (CLAStructure of CLACLA ), JB (LMGStructure of LMGLMG ), JC (CLAStructure of CLACLA ), JD (CLAStructure of CLACLA ), JE (FE2Structure of FE2FE2 ), KA (PHOStructure of PHOPHO ), KB (DGDStructure of DGDDGD ), KC (BCRStructure of BCRBCR ), KD (CLAStructure of CLACLA ), KE (LHGStructure of LHGLHG ), LA (BCRStructure of BCRBCR ), LB (CLAStructure of CLACLA ), LC (LHGStructure of LHGLHG ), LD (BCRStructure of BCRBCR ), LE (CLAStructure of CLACLA ), MA (SQDStructure of SQDSQD ), MB (CLAStructure of CLACLA ), MC (BCRStructure of BCRBCR ), MD (CLAStructure of CLACLA ), ME (PL9Structure of PL9PL9 ), NA (LHGStructure of LHGLHG ), NB (CLAStructure of CLACLA ), NC (OEXStructure of OEXOEX ), ND (LMGStructure of LMGLMG ), NE (LHGStructure of LHGLHG ), OA (CLAStructure of CLACLA ), OB (CLAStructure of CLACLA ), OC (CLAStructure of CLACLA ), OD (CLAStructure of CLACLA ), OE (BCRStructure of BCRBCR ), PA (CLAStructure of CLACLA ), PB (CLAStructure of CLACLA ), PC (CLAStructure of CLACLA ), PD (CLAStructure of CLACLA ), PE (CLAStructure of CLACLA ), QA (CLAStructure of CLACLA ), QB (CLAStructure of CLACLA ), QC (CLAStructure of CLACLA ), QD (DGDStructure of DGDDGD ), QE (LMGStructure of LMGLMG ), RA (LMGStructure of LMGLMG ), RB (CLAStructure of CLACLA ), RC (SQDStructure of SQDSQD ), RD (CLStructure of CLCL ), SA (CLAStructure of CLACLA ), SB (CLAStructure of CLACLA ), SC (CLAStructure of CLACLA ), SD (LMGStructure of LMGLMG ), SE (BCRStructure of BCRBCR ), TA (CLAStructure of CLACLA ), TB (CLAStructure of CLACLA ), TC (CLStructure of CLCL ), TD (CLAStructure of CLACLA ), TE (LHGStructure of LHGLHG ), UA (CLAStructure of CLACLA ), UB (DGDStructure of DGDDGD ), UC (PHOStructure of PHOPHO ), UD (CLAStructure of CLACLA ), VA (CLAStructure of CLACLA ), VB (CLAStructure of CLACLA ), VC (LHGStructure of LHGLHG ), VD (CLAStructure of CLACLA ), WA (CLAStructure of CLACLA ), WB (CLAStructure of CLACLA ), WC (CLAStructure of CLACLA ), WD (CLAStructure of CLACLA ), XA (BCRStructure of BCRBCR ), XB (CLAStructure of CLACLA ), XC (BCRStructure of BCRBCR ), XD (CLAStructure of CLACLA ), YA (CLAStructure of CLACLA ), YB (CLAStructure of CLACLA ), YC (CLAStructure of CLACLA ), YD (CLAStructure of CLACLA ), ZA (BCRStructure of BCRBCR ), ZB (FE2Structure of FE2FE2 ), ZC (CLAStructure of CLACLA ), ZD (CLAStructure of CLACLA )
Each chain information

Showing all 30 chains (4 with heme). Show only chains with heme

Chain A  
auth_asym_id A
Residue indices (Uniprot) 13-344 (-)
Missing residues 226GLU-232SER:242GLU-245THR:260PHE-264SER
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain AA  
auth_asym_id o
Residue indices (Uniprot) 89-330 (-)
Missing residues 116ASP-118GLY:146ASP-153PRO:180SER-183SER
Structural gaps Exists
Uniprot ID Unavailable
S-S bonds 112:135
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.16 Å
Chain B  
auth_asym_id B
Residue indices (Uniprot) 2-484 (-)
Missing residues 83GLY-87ASN:126GLU-130LYS
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain BA  
auth_asym_id t
Residue indices (Uniprot) 1-29 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id C
Residue indices (Uniprot) 33-472 (-)
Missing residues 74HIS-78GLU:98GLY-110PRO:134LEU-136GLY:139THR-146PHE:167LEU-171GLY:190ALA-193GLY:200THR-207SER:241GLY-242SER:253LEU-255LYS:413GLU-416ALA
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.15 Å
Chain CA  
auth_asym_id u
Residue indices (Uniprot) 4-28 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id D
Residue indices (Uniprot) 13-351 (-)
Missing residues 226GLY-230ASN:233ARG-240ALA
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain DA  
auth_asym_id x
Residue indices (Uniprot) 81-113 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain E heme  
auth_asym_id E
Residue indices (Uniprot) 21-82 (-)
Uniprot ID Unavailable
label_asym_ids of heme IC
Available structure PDB
Chain F heme  
auth_asym_id F
Residue indices (Uniprot) 16-43 (-)
Uniprot ID Unavailable
label_asym_ids of heme IC
Available structure PDB
Chain G  
auth_asym_id H
Residue indices (Uniprot) 14-70 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id I
Residue indices (Uniprot) 1-33 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id K
Residue indices (Uniprot) 32-58 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain J  
auth_asym_id L
Residue indices (Uniprot) 4-38 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id M
Residue indices (Uniprot) 2-32 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id O
Residue indices (Uniprot) 89-330 (-)
Missing residues 116ASP-118GLY:146ASP-153PRO:180SER-183SER
Structural gaps Exists
Uniprot ID Unavailable
S-S bonds 112:135
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.15 Å
Chain M  
auth_asym_id T
Residue indices (Uniprot) 1-29 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain N  
auth_asym_id U
Residue indices (Uniprot) 4-28 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain O  
auth_asym_id X
Residue indices (Uniprot) 81-113 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain P  
auth_asym_id a
Residue indices (Uniprot) 13-344 (-)
Missing residues 226GLU-232SER:242GLU-245THR:260PHE-264SER
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain Q  
auth_asym_id b
Residue indices (Uniprot) 2-484 (-)
Missing residues 83GLY-87ASN:126GLU-130LYS
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain R  
auth_asym_id c
Residue indices (Uniprot) 33-472 (-)
Missing residues 74HIS-78GLU:98GLY-110PRO:134LEU-136GLY:139THR-146PHE:167LEU-171GLY:190ALA-193GLY:200THR-207SER:241GLY-242SER:253LEU-255LYS:413GLU-416ALA
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 1.25 Å
Chain S  
auth_asym_id d
Residue indices (Uniprot) 13-351 (-)
Missing residues 226GLY-230ASN:233ARG-240ALA
Structural gaps Exists
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain T heme  
auth_asym_id e
Residue indices (Uniprot) 21-82 (-)
Uniprot ID Unavailable
label_asym_ids of heme RE
Available structure PDB
Chain U heme  
auth_asym_id f
Residue indices (Uniprot) 16-43 (-)
Uniprot ID Unavailable
label_asym_ids of heme RE
Available structure PDB
Chain V  
auth_asym_id h
Residue indices (Uniprot) 14-70 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id i
Residue indices (Uniprot) 1-33 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id k
Residue indices (Uniprot) 32-58 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id l
Residue indices (Uniprot) 4-38 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id m
Residue indices (Uniprot) 2-32 (-)
Uniprot ID Unavailable
label_asym_ids of heme None
Available structure PDB