Danish

PDB ID: pdb_00005h2f

Crystal structure of the PsbM-deletion mutant of photosystem II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposition date: 2016-10-15

Number of assemblies: 2

Assembly ID: 1 (author_defined_assembly)
Structural data	modeled
Oligomeric count	18
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others	AB (DMS ), AC (LMT ), AD (CLA ), AE (HTG ), AF (DMS ), AG (DMS ), AH (UNL ), BB (DMS ), BC (HTG ), BD (CLA ), BE (DMS ), BF (LMT ), BG (DMS ), BH (LMT ), CB (DMS ), CC (UNL ), CD (CLA ), CE (DMS ), CG (DMS ), CH (UNL ), DB (DMS ), DC (UNL ), DD (CLA ), DE (DMS ), DF (DMS ), DG (DMS ), EB (BCT ), EC (HTG ), ED (CLA ), EE (DMS ), EF (RRX ), EG (DMS ), FB (CA ), FC (HTG ), FD (CLA ), FE (DMS ), FF (DGD ), FG (DMS ), GB (CLA ), GC (DMS ), GD (CLA ), GE (DMS ), GF (DMS ), GG (DMS ), HB (CLA ), HC (DMS ), HD (CLA ), HE (DMS ), HF (DMS ), HG (DMS ), IB (CLA ), IC (DMS ), ID (CLA ), IE (DMS ), IF (LMT ), IG (UNL ), JB (CLA ), JC (DMS ), JD (BCR ), JE (CLA ), JF (UNL ), JG (LMT ), KA (OEX ), KB (CLA ), KC (DMS ), KD (BCR ), KE (PHO ), KF (UNL ), KG (UNL ), LA (FE2 ), LB (CLA ), LC (DMS ), LD (DGD ), LE (CLA ), LF (UNL ), LG (DMS ), MA (CL ), MB (CLA ), MC (DMS ), MD (DGD ), ME (CLA ), MF (DMS ), MG (DMS ), NA (CL ), NB (CLA ), NC (DMS ), ND (DGD ), NE (BCR ), NF (LMG ), NG (DMS ), OA (CLA ), OB (CLA ), OC (DMS ), OD (LMG ), OE (PL9 ), OF (MG ), PA (CLA ), PB (CLA ), PC (DMS ), PD (HTG ), PE (DGD ), PF (UNL ), PG (HTG ), QA (PHO ), QB (CLA ), QC (DMS ), QD (LHG ), QE (SQD ), QF (BCR ), QG (DMS ), RA (CLA ), RB (CLA ), RC (DMS ), RD (HTG ), RE (LHG ), RF (MG ), RG (DMS ), SA (BCR ), SB (CLA ), SC (DMS ), SD (DMS ), SE (LHG ), SF (LHG ), SG (DMS ), TA (LMG ), TB (CLA ), TC (DMS ), TD (DMS ), TE (LHG ), TF (DMS ), TG (DMS ), UA (PL9 ), UB (CLA ), UC (DMS ), UD (DMS ), UE (LMG ), UF (UNL ), UG (DMS ), VA (LHG ), VB (CLA ), VC (SQD ), VD (DMS ), VE (UNL ), VF (CA ), VG (DMS ), WA (SQD ), WB (BCR ), WC (CLA ), WD (DMS ), WE (HTG ), WF (DMS ), WG (DMS ), XA (LMT ), XB (BCR ), XC (CLA ), XD (DMS ), XE (HTG ), XF (DMS ), XG (DMS ), YA (UNL ), YB (BCR ), YC (CLA ), YD (DMS ), YE (DMS ), YF (DMS ), YG (DMS ), ZA (DMS ), ZB (LMG ), ZC (CLA ), ZD (LMG ), ZE (DMS ), ZF (DMS ), ZG (BCR )

Each chain information

Showing all 18 chains (3 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	11-344 (11-344)
Uniprot ID	P0A444 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-506 (2-506)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	23-473 (7-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	11-352 (11-352)
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	5-83 (5-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	CF
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	13-45 (13-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	CF
Available structure	PDB

Chain G
auth_asym_id	H
Residue indices (Uniprot)	2-64 (2-64)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-36)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain I
auth_asym_id	J
Residue indices (Uniprot)	5-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	10-46 (10-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	3-37 (3-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	O
Residue indices (Uniprot)	4-246 (30-272)
Uniprot ID	P0A431 ￫UniprotKB
S-S bonds	19:44
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	T
Residue indices (Uniprot)	1-30 (1-30)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å

Chain N
auth_asym_id	U
Residue indices (Uniprot)	8-104 (38-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O heme
auth_asym_id	V
Residue indices (Uniprot)	1-137 (27-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	OG
Available structure	PDB

Chain P
auth_asym_id	Y
Residue indices (Uniprot)	18-46 (18-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	X
Residue indices (Uniprot)	2-38 (2-38)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	Z
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Assembly ID: 2 (author_defined_assembly)
Structural data	modeled
Oligomeric count	18
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others	AI (DMS ), AJ (UNL ), AK (CLA ), AL (DMS ), AM (DGD ), AN (LMT ), BI (DMS ), BJ (HTG ), BK (CLA ), BL (DMS ), BM (LMG ), BN (UNL ), CI (CA ), CJ (HTG ), CK (BCR ), CL (DMS ), CM (UNL ), CN (DMS ), DH (DMS ), DI (CLA ), DJ (UNL ), DK (BCR ), DL (DMS ), DM (UNL ), DN (DMS ), EH (DMS ), EI (CLA ), EJ (DMS ), EK (DGD ), EL (DMS ), EM (UNL ), EN (DMS ), FH (OEX ), FI (CLA ), FJ (DMS ), FK (DGD ), FL (DMS ), FM (UNL ), FN (UNL ), GH (FE2 ), GI (CLA ), GJ (DMS ), GK (DGD ), GL (LHG ), GM (DMS ), GN (DMS ), HH (CL ), HI (CLA ), HJ (HTG ), HK (LMG ), HL (CLA ), HM (LMG ), HN (DMS ), IH (CL ), II (CLA ), IJ (DMS ), IK (LMT ), IL (CLA ), IM (MG ), IN (DMS ), JH (CLA ), JI (CLA ), JJ (DMS ), JK (HTG ), JL (BCR ), JM (UNL ), JN (DMS ), KH (CLA ), KI (CLA ), KJ (DMS ), KK (DMS ), KL (PL9 ), KM (BCR ), KN (DMS ), LH (CLA ), LI (CLA ), LJ (DMS ), LK (DMS ), LL (DGD ), LM (MG ), MH (PHO ), MI (CLA ), MJ (DMS ), MK (DMS ), ML (LHG ), MM (SQD ), MN (HTG ), NH (PHO ), NI (CLA ), NJ (DMS ), NK (DMS ), NL (LHG ), NM (LHG ), NN (DMS ), OH (CLA ), OI (CLA ), OJ (CA ), OK (DMS ), OL (LMG ), OM (DMS ), ON (DMS ), PH (BCR ), PI (CLA ), PJ (CLA ), PK (DMS ), PL (UNL ), PM (DMS ), PN (DMS ), QH (SQD ), QI (CLA ), QJ (CLA ), QK (DMS ), QL (DMS ), QM (DMS ), QN (DMS ), RH (PL9 ), RI (CLA ), RJ (CLA ), RK (LMG ), RL (DMS ), RM (HTG ), RN (DMS ), SH (LHG ), SI (CLA ), SJ (CLA ), SK (LMT ), SL (DMS ), SM (CA ), SN (DMS ), TH (UNL ), TI (BCR ), TJ (CLA ), TK (UNL ), TL (DMS ), TM (DMS ), TN (DMS ), UH (SQD ), UI (BCR ), UJ (CLA ), UK (DMS ), UL (DMS ), UM (DMS ), UN (DMS ), VH (LMT ), VI (BCR ), VJ (CLA ), VK (DMS ), VM (DMS ), VN (BCR ), WH (UNL ), WI (SQD ), WJ (CLA ), WK (DMS ), WL (SQD ), WM (DMS ), WN (UNL ), XH (DMS ), XI (LMG ), XJ (CLA ), XK (DMS ), XL (LMT ), XM (DMS ), YH (BCT ), YI (HTG ), YJ (CLA ), YK (DMS ), YL (DMS ), YM (DMS ), ZH (LHG ), ZI (HTG ), ZJ (CLA ), ZK (DMS ), ZL (RRX ), ZM (DMS )

Each chain information

Showing all 18 chains (3 with heme). Show only chains with heme

Chain AA
auth_asym_id	j
Residue indices (Uniprot)	1-40 (1-40)
Uniprot ID	P59087 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	k
Residue indices (Uniprot)	10-46 (10-46)
Uniprot ID	Q9F1K9 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	l
Residue indices (Uniprot)	3-37 (3-37)
Uniprot ID	Q8DIN8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	o
Residue indices (Uniprot)	4-246 (30-272)
Uniprot ID	P0A431 ￫UniprotKB
S-S bonds	19:44
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	t
Residue indices (Uniprot)	1-30 (1-30)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DIQ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.14 Å

Chain FA
auth_asym_id	u
Residue indices (Uniprot)	8-104 (38-134)
Uniprot ID	Q9F1L5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA heme
auth_asym_id	v
Residue indices (Uniprot)	1-137 (27-163)
Uniprot ID	P0A386 ￫UniprotKB
label_asym_ids of heme	LN
Available structure	PDB

Chain HA
auth_asym_id	y
Residue indices (Uniprot)	18-46 (18-46)
Uniprot ID	Q8DJI1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	x
Residue indices (Uniprot)	2-37 (2-38)
Uniprot ID	Q9F1R6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	Q8DHJ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	a
Residue indices (Uniprot)	11-344 (11-344)
Uniprot ID	P0A444 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	b
Residue indices (Uniprot)	2-484 (2-506)
Uniprot ID	Q8DIQ1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	c
Residue indices (Uniprot)	19-473 (7-461)
Uniprot ID	Q8DIF8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	d
Residue indices (Uniprot)	12-352 (11-352)
Uniprot ID	Q8CM25 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W heme
auth_asym_id	e
Residue indices (Uniprot)	6-84 (5-84)
Uniprot ID	Q8DIP0 ￫UniprotKB
label_asym_ids of heme	VL
Available structure	PDB

Chain X heme
auth_asym_id	f
Residue indices (Uniprot)	15-45 (13-45)
Uniprot ID	Q8DIN9 ￫UniprotKB
label_asym_ids of heme	VL
Available structure	PDB

Chain Y
auth_asym_id	h
Residue indices (Uniprot)	2-63 (2-64)
Uniprot ID	Q8DJ43 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	i
Residue indices (Uniprot)	1-36 (1-36)
Missing residues	1MET-1MET
Nonstandard amino acids
Uniprot ID	Q8DJZ6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.15 Å