Danish
PDB ID:  pdb_00005xnm
  • Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2017-05-23
Number of assemblies:  1
Assembly ID:  0  (author_defined_assembly)    
Structural data including_not_modeled
Oligomeric count 54
label_asym_ids of protein
54 chains (4 with heme) A, AA, AB, B, BA, BB, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA
label_asym_ids of heme AQ RG
label_asym_ids of the others
show AC (CHL), AD (CLA), AE (CLA), AF (BCR), AG (BCR), AH (CHL), AI (CLA), AJ (CLA), AK (CLA), AL (LUT), AM (CLA), AN (CLA), AO (CLA), AP (CLA), AR (CLA), AS (CLA), AT (CHL), BC (CHL), BD (CLA), BE (PHO), BF (BCR), BG (DGD), BH (CLA), BI (CLA), BJ (CLA), BK (CLA), BL (XAT), BM (CHL), BN (LUT), BO (CLA), BP (CLA), BQ (CHL), BR (CHL), BS (CLA), BT (CLA), CB (CHL), CC (CHL), CD (LUT), CE (PHO), CF (BCR), CG (DGD), CH (CLA), CI (LUT), CJ (CLA), CK (CLA), CL (NEX), CM (CHL), CN (XAT), CO (CLA), CP (CLA), CQ (CLA), CR (CHL), CS (CHL), CT (CLA), DB (CLA), DC (CHL), DD (LUT), DE (CLA), DF (SQD), DG (DGD), DH (CLA), DI (LUT), DJ (CHL), DK (CLA), DL (LHG), DM (CHL), DN (BCR), DO (CLA), DP (CLA), DQ (CLA), DR (CHL), DS (CLA), DT (CLA), EB (CLA), EC (CLA), ED (XAT), EE (BCR), EF (LMG), EG (LMG), EH (CLA), EI (XAT), EJ (CHL), EK (CLA), EL (CHL), EM (CHL), EN (LHG), EO (CLA), EP (CLA), EQ (CLA), ER (CHL), ES (LUT), ET (CHL), FB (CLA), FC (CLA), FD (NEX), FE (SQD), FF (SQD), FG (LHG), FH (CLA), FI (NEX), FJ (CHL), FK (LUT), FL (CLA), FM (CHL), FN (OEX), FO (CLA), FP (CLA), FQ (CHL), FR (CHL), FS (XAT), FT (CHL), GB (CHL), GC (CLA), GD (LHG), GE (LMG), GF (DGD), GG (LHG), GH (LUT), GI (LHG), GJ (CLA), GK (LUT), GL (CLA), GM (CLA), GN (FE2), GO (CLA), GP (BCR), GQ (CHL), GR (CLA), GS (NEX), GT (CHL), HB (CHL), HC (CLA), HD (CHL), HE (PL9), HF (LHG), HG (LHG), HH (LUT), HI (CLA), HJ (CLA), HK (XAT), HL (CLA), HM (CLA), HN (CLA), HO (CLA), HP (BCR), HQ (CHL), HR (CLA), HS (LHG), HT (CHL), IB (CHL), IC (CLA), ID (CLA), IE (LMG), IF (LHG), IG (BCT), IH (XAT), II (CLA), IJ (CLA), IK (NEX), IL (CHL), IM (CLA), IN (CLA), IO (CLA), IP (BCR), IQ (CHL), IR (CLA), IS (CHL), IT (CHL), JB (CHL), JC (LUT), JD (CLA), JE (SQD), JF (LMG), JG (CLA), JH (NEX), JI (CLA), JJ (CLA), JK (LHG), JL (CHL), JM (CLA), JN (CLA), JO (BCR), JP (BCR), JQ (CHL), JR (CLA), JS (CLA), JT (CLA), KB (CHL), KC (LUT), KD (CLA), KE (CLA), KF (CLA), KG (CLA), KH (LHG), KI (CLA), KJ (CLA), KK (LMG), KL (CHL), KM (CLA), KN (PHO), KO (BCR), KP (DGD), KQ (CLA), KR (CLA), KS (CLA), KT (CLA), LB (CLA), LC (XAT), LD (CHL), LE (CLA), LF (CLA), LG (BCR), LH (BCR), LI (CHL), LJ (CLA), LK (CHL), LL (CHL), LM (LUT), LN (PHO), LO (BCR), LP (DGD), LQ (CLA), LR (LUT), LS (CLA), LT (CLA), MB (CLA), MC (NEX), MD (CHL), ME (CLA), MF (CLA), MG (PL9), MH (DGD), MI (CHL), MJ (LUT), MK (CLA), ML (CHL), MM (LUT), MN (CLA), MO (SQD), MP (DGD), MQ (CLA), MR (LUT), MS (CHL), MT (CLA), NB (CLA), NC (LHG), ND (CHL), NE (CLA), NF (CLA), NG (LHG), NH (LHG), NI (CHL), NJ (LUT), NK (CLA), NL (CLA), NM (XAT), NN (BCR), NO (LMG), NP (LMG), NQ (CLA), NR (XAT), NS (CHL), NT (CLA), OB (CLA), OC (CHL), OD (CHL), OE (CLA), OF (CLA), OG (LHG), OH (CHL), OI (CLA), OJ (NEX), OK (CLA), OL (CLA), OM (NEX), ON (SQD), OO (SQD), OP (LHG), OQ (CLA), OR (NEX), OS (CHL), OT (LUT), PB (CLA), PC (CLA), PD (CLA), PE (CLA), PF (CLA), PG (LHG), PH (CLA), PI (CLA), PJ (LHG), PK (CHL), PL (CLA), PM (LHG), PN (LMG), PO (DGD), PP (LHG), PQ (LUT), PR (LHG), PS (CLA), PT (LUT), QB (LUT), QC (CLA), QD (CLA), QE (CLA), QF (CLA), QG (LMG), QH (CLA), QI (CLA), QJ (BCR), QK (CHL), QL (CLA), QM (CHL), QN (PL9), QO (LHG), QP (LHG), QQ (LUT), QR (CLA), QS (CLA), QT (XAT), RB (LUT), RC (CLA), RD (CLA), RE (CLA), RF (CLA), RH (CLA), RI (CLA), RJ (CHL), RK (CHL), RL (CLA), RM (CLA), RN (LMG), RO (LHG), RP (BCT), RQ (XAT), RR (CLA), RS (CLA), RT (NEX), SB (XAT), SC (CHL), SD (LUT), SE (CLA), SF (CLA), SG (CHL), SH (CHL), SI (CLA), SJ (CLA), SK (CHL), SL (LUT), SM (CLA), SN (SQD), SO (LMG), SP (CLA), SQ (NEX), SR (CLA), SS (CLA), ST (LHG), TB (NEX), TC (CHL), TD (XAT), TE (CLA), TF (CLA), TG (CLA), TH (CHL), TI (CHL), TJ (CLA), TK (CHL), TL (LUT), TM (CLA), TN (CLA), TO (CLA), TP (CLA), TQ (LHG), TR (CLA), TS (CLA), TT (LMG), UB (LHG), UC (CHL), UD (BCR), UE (CLA), UF (CLA), UG (CLA), UH (CHL), UI (CLA), UJ (CLA), UK (CLA), UL (XAT), UM (CHL), UN (CLA), UO (CLA), UP (BCR), UQ (BCR), UR (CHL), US (CLA), VB (CHL), VC (CHL), VD (LHG), VE (CLA), VF (CLA), VG (CLA), VH (CHL), VI (LUT), VJ (CHL), VK (CLA), VL (NEX), VM (CHL), VN (CLA), VO (CLA), VP (PL9), VQ (DGD), VR (CHL), VS (LUT), WB (CLA), WC (CHL), WD (OEX), WE (CLA), WF (CLA), WG (CHL), WH (CHL), WI (XAT), WJ (CHL), WK (CLA), WL (LHG), WM (CHL), WN (CLA), WO (CLA), WP (LHG), WQ (LHG), WR (CHL), WS (LUT), XB (CLA), XC (CLA), XD (FE2), XE (CLA), XF (BCR), XG (CHL), XH (CLA), XI (NEX), XJ (CHL), XK (CLA), XL (CHL), XM (CHL), XN (CLA), XO (CLA), XP (LHG), XQ (CHL), XR (CLA), XS (NEX), YB (CLA), YC (CLA), YD (CLA), YE (CLA), YF (BCR), YG (CHL), YH (CLA), YI (LHG), YJ (CHL), YK (CLA), YL (CLA), YM (CLA), YN (CLA), YO (CLA), YP (LHG), YQ (CLA), YR (CLA), YS (LHG), ZB (CHL), ZC (CLA), ZD (CLA), ZE (CLA), ZF (BCR), ZG (CHL), ZH (CLA), ZI (CHL), ZJ (CHL), ZK (LUT), ZL (CLA), ZM (CLA), ZN (CLA), ZO (CLA), ZP (LMG), ZQ (CLA), ZR (CLA), ZS (BCR)
Each chain information

Showing all 54 chains (4 with heme). Show only chains with heme

Chain A  
auth_asym_id 1
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain AA  
auth_asym_id Z
Residue indices (Uniprot) 1-62 (1-62)
Uniprot ID Q32902 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain AB  
auth_asym_id y
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain B  
auth_asym_id 2
Residue indices (Uniprot) 14-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BA  
auth_asym_id 5
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BB  
auth_asym_id z
Residue indices (Uniprot) 1-62 (1-62)
Uniprot ID Q32902 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id 3
Residue indices (Uniprot) 23-242 (23-265)
Uniprot ID Q04918 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain CA  
auth_asym_id 6
Residue indices (Uniprot) 14-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id 4
Residue indices (Uniprot) 5-209 (1-210)
Missing residues 12GLY-19LEU
Structural gaps Exists
Uniprot ID A0A2D0TCJ3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain DA  
auth_asym_id 7
Residue indices (Uniprot) 23-242 (23-265)
Uniprot ID Q04918 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id A
Residue indices (Uniprot) 11-344 (1-344)
Uniprot ID P06585 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain EA  
auth_asym_id 8
Residue indices (Uniprot) 5-209 (1-210)
Missing residues 12GLY-19LEU
Structural gaps Exists
Uniprot ID A0A2D0TCJ3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.17 Å
Chain F  
auth_asym_id B
Residue indices (Uniprot) 2-504 (1-507)
Uniprot ID Q9XQR6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain FA  
auth_asym_id a
Residue indices (Uniprot) 11-344 (1-344)
Uniprot ID P06585 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id C
Residue indices (Uniprot) 24-473 (1-473)
Uniprot ID P06004 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain GA  
auth_asym_id b
Residue indices (Uniprot) 2-504 (1-507)
Uniprot ID Q9XQR6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain H  
auth_asym_id D
Residue indices (Uniprot) 13-352 (1-353)
Uniprot ID P06006 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain HA  
auth_asym_id c
Residue indices (Uniprot) 24-473 (1-473)
Uniprot ID P06004 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I heme  
auth_asym_id E
Residue indices (Uniprot) 8-82 (1-83)
Uniprot ID P13554 ￫UniprotKB
label_asym_ids of heme RG
Available structure PDB
Chain IA  
auth_asym_id d
Residue indices (Uniprot) 13-352 (1-353)
Uniprot ID P06006 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J heme  
auth_asym_id F
Residue indices (Uniprot) 10-39 (1-39)
Uniprot ID Q7H8J8 ￫UniprotKB
label_asym_ids of heme RG
Available structure PDB
Chain JA heme  
auth_asym_id e
Residue indices (Uniprot) 8-82 (1-83)
Uniprot ID P13554 ￫UniprotKB
label_asym_ids of heme AQ
Available structure PDB
Chain K  
auth_asym_id G
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain KA heme  
auth_asym_id f
Residue indices (Uniprot) 10-39 (1-39)
Uniprot ID Q7H8J8 ￫UniprotKB
label_asym_ids of heme AQ
Available structure PDB
Chain L  
auth_asym_id H
Residue indices (Uniprot) 13-72 (1-73)
Uniprot ID Q9XQR3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain LA  
auth_asym_id g
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id I
Residue indices (Uniprot) 1-34 (1-36)
Uniprot ID D5MAJ9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain MA  
auth_asym_id h
Residue indices (Uniprot) 13-72 (1-73)
Uniprot ID Q9XQR3 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N  
auth_asym_id J
Residue indices (Uniprot) 6-39 (1-40)
Uniprot ID P13555 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain NA  
auth_asym_id i
Residue indices (Uniprot) 1-34 (1-36)
Uniprot ID D5MAJ9 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain O  
auth_asym_id K
Residue indices (Uniprot) 25-61 (1-61)
Uniprot ID D5MAJ8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain OA  
auth_asym_id j
Residue indices (Uniprot) 6-39 (1-40)
Uniprot ID P13555 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain P  
auth_asym_id L
Residue indices (Uniprot) 2-38 (1-38)
Uniprot ID P60147 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain PA  
auth_asym_id k
Residue indices (Uniprot) 25-61 (1-61)
Uniprot ID D5MAJ8 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id M
Residue indices (Uniprot) 1-33 (1-34)
Uniprot ID P69529 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain QA  
auth_asym_id l
Residue indices (Uniprot) 2-38 (1-38)
Uniprot ID P60147 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id N
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain RA  
auth_asym_id m
Residue indices (Uniprot) 1-33 (1-34)
Uniprot ID P69529 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id O
Residue indices (Uniprot) 1-248 (82-329)
Structural gaps Exists
Uniprot ID P14226 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain SA  
auth_asym_id n
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id R
Residue indices (Uniprot) 11-244 (1-246)
Uniprot ID A0A2D0TCJ0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain TA  
auth_asym_id o
Residue indices (Uniprot) 1-248 (82-329)
Structural gaps Exists
Uniprot ID P14226 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain U  
auth_asym_id S
Residue indices (Uniprot) 19-236 (1-244)
Uniprot ID A0A2D0TCJ1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain UA  
auth_asym_id r
Residue indices (Uniprot) 11-244 (1-246)
Uniprot ID A0A2D0TCJ0 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id T
Residue indices (Uniprot) 1-32 (1-35)
Uniprot ID Q8HS25 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain VA  
auth_asym_id s
Residue indices (Uniprot) 19-236 (1-244)
Uniprot ID A0A2D0TCJ1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id U
Residue indices (Uniprot) 4-28 (1-99)
Uniprot ID A0A9R0J8H2 ￫UniprotKB
S-S bonds 17:26
label_asym_ids of heme None
Available structure PDB
Chain WA  
auth_asym_id t
Residue indices (Uniprot) 1-32 (1-35)
Uniprot ID Q8HS25 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain X  
auth_asym_id W
Residue indices (Uniprot) 1-54 (1-54)
Uniprot ID A0A2D0TCJ2 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain XA  
auth_asym_id u
Residue indices (Uniprot) 4-28 (1-99)
Uniprot ID A0A9R0J8H2 ￫UniprotKB
S-S bonds 17:26
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id X
Residue indices (Uniprot) 45-83 (1-86)
Uniprot ID Q8VYY1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain YA  
auth_asym_id w
Residue indices (Uniprot) 1-54 (1-54)
Uniprot ID A0A2D0TCJ2 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id Y
Residue indices (Uniprot) 13-231 (37-268)
Uniprot ID P27490 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain ZA  
auth_asym_id x
Residue indices (Uniprot) 45-83 (1-86)
Uniprot ID Q8VYY1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB