PDB ID:  pdb_00007pl0
  • Crystal structure of a DyP-type peroxidase 5G5 variant from Bacillus subtilis
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • Deposition date: 2021-08-27
Number of assemblies:  2
Assembly ID:  1  (software_defined_assembly)    
Structural data modeled
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others
Each chain information
Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 56-414 (1-416)
Mutations (UniProt numbering)
Missing residues 309GLN-321ILE
Structural gaps Exists
Uniprot ID P39597 →UniprotKB
label_asym_ids of heme E
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 56-414 (1-416)
Mutations (UniProt numbering)
Missing residues 112MET-116GLN:309GLN-321ILE
Structural gaps Exists
Uniprot ID P39597 →UniprotKB
label_asym_ids of heme F
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Assembly ID:  2  (software_defined_assembly)    
Structural data modeled
Oligomeric count 2
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others
Each chain information
Chain C heme  
auth_asym_id C
Residue indices (Uniprot) 56-414 (1-416)
Mutations (UniProt numbering)
Missing residues 114ALA-115GLU:309GLN-321ILE
Structural gaps Exists
Uniprot ID P39597 →UniprotKB
label_asym_ids of heme G
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain D heme  
auth_asym_id D
Residue indices (Uniprot) 56-414 (1-416)
Mutations (UniProt numbering)
Missing residues 112MET-116GLN:317GLU-321ILE
Structural gaps Exists
Uniprot ID P39597 →UniprotKB
label_asym_ids of heme H
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å