Danish
PDB ID:  pdb_00007vlf
  • Oxy-deoxy intermediate of V2 hemoglobin at 26% oxygen saturation
  • Experimental method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • Deposition date: 2021-10-02
Number of assemblies:  1
Assembly ID:  1  (author_and_software_defined_assembly)    
Structural data modeled
Oligomeric count 24
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others I (NAGStructure of NAGNAG , FUCStructure of FUCFUC ), I-1 (NAGStructure of NAGNAG , FUCStructure of FUCFUC ), I-2 (NAGStructure of NAGNAG , FUCStructure of FUCFUC ), J (NAGStructure of NAGNAG , FUCStructure of FUCFUC ), J-1 (NAGStructure of NAGNAG , FUCStructure of FUCFUC ), J-2 (NAGStructure of NAGNAG , FUCStructure of FUCFUC ), M (CAStructure of CACA ), M-1 (CAStructure of CACA ), M-2 (CAStructure of CACA ), O (OXYStructure of OXYOXY ), O-1 (OXYStructure of OXYOXY ), O-2 (OXYStructure of OXYOXY ), Q (OXYStructure of OXYOXY ), Q-1 (OXYStructure of OXYOXY ), Q-2 (OXYStructure of OXYOXY ), T (OXYStructure of OXYOXY ), T-1 (OXYStructure of OXYOXY ), T-2 (OXYStructure of OXYOXY ), U (CAStructure of CACA ), U-1 (CAStructure of CACA ), U-2 (CAStructure of CACA ), W (OXYStructure of OXYOXY ), W-1 (OXYStructure of OXYOXY ), W-2 (OXYStructure of OXYOXY )
Each chain information
Chain A heme  
auth_asym_id A
Residue indices (Uniprot) 1-146 (20-165)
Uniprot ID S0BBU7 ￫UniprotKB
S-S bonds 2:131
label_asym_ids of heme K
Available structure PDB
Chain A-1 heme  
auth_asym_id A
Residue indices (Uniprot) 1-146 (20-165)
Uniprot ID S0BBU7 ￫UniprotKB
S-S bonds 2:131
label_asym_ids of heme K-1
Available structure PDB
Chain A-2 heme  
auth_asym_id A
Residue indices (Uniprot) 1-146 (20-165)
Uniprot ID S0BBU7 ￫UniprotKB
S-S bonds 2:131
label_asym_ids of heme K-2
Available structure PDB
Chain B heme  
auth_asym_id B
Residue indices (Uniprot) 1-143 (17-160)
Uniprot ID S0BBR6 ￫UniprotKB
S-S bonds 3:133
label_asym_ids of heme L
Available structure PDB
Chain B-1 heme  
auth_asym_id B
Residue indices (Uniprot) 1-143 (17-160)
Uniprot ID S0BBR6 ￫UniprotKB
S-S bonds 3:133
label_asym_ids of heme L-1
Available structure PDB
Chain B-2 heme  
auth_asym_id B
Residue indices (Uniprot) 1-143 (17-160)
Uniprot ID S0BBR6 ￫UniprotKB
S-S bonds 3:133
label_asym_ids of heme L-2
Available structure PDB
Chain C heme  
auth_asym_id C
Residue indices (Uniprot) 1-150 (17-166)
Uniprot ID S0BCU7 ￫UniprotKB
S-S bonds 5:136
label_asym_ids of heme N
Available structure PDB
Chain C-1 heme  
auth_asym_id C
Residue indices (Uniprot) 1-150 (17-166)
Uniprot ID S0BCU7 ￫UniprotKB
S-S bonds 5:136
label_asym_ids of heme N-1
Available structure PDB
Chain C-2 heme  
auth_asym_id C
Residue indices (Uniprot) 1-150 (17-166)
Uniprot ID S0BCU7 ￫UniprotKB
S-S bonds 5:136
label_asym_ids of heme N-2
Available structure PDB
Chain D heme  
auth_asym_id D
Residue indices (Uniprot) 1-149 (20-168)
Uniprot ID S0BAP9 ￫UniprotKB
S-S bonds 4:136
label_asym_ids of heme P
Available structure PDB
Chain D-1 heme  
auth_asym_id D
Residue indices (Uniprot) 1-149 (20-168)
Uniprot ID S0BAP9 ￫UniprotKB
S-S bonds 4:136
label_asym_ids of heme P-1
Available structure PDB
Chain D-2 heme  
auth_asym_id D
Residue indices (Uniprot) 1-149 (20-168)
Uniprot ID S0BAP9 ￫UniprotKB
S-S bonds 4:136
label_asym_ids of heme P-2
Available structure PDB
Chain E heme  
auth_asym_id E
Residue indices (Uniprot) 1-146 (20-165)
Uniprot ID S0BBU7 ￫UniprotKB
S-S bonds 2:131
label_asym_ids of heme R
Available structure PDB
Chain E-1 heme  
auth_asym_id E
Residue indices (Uniprot) 1-146 (20-165)
Uniprot ID S0BBU7 ￫UniprotKB
S-S bonds 2:131
label_asym_ids of heme R-1
Available structure PDB
Chain E-2 heme  
auth_asym_id E
Residue indices (Uniprot) 1-146 (20-165)
Uniprot ID S0BBU7 ￫UniprotKB
S-S bonds 2:131
label_asym_ids of heme R-2
Available structure PDB
Chain F heme  
auth_asym_id F
Residue indices (Uniprot) 1-144 (17-160)
Uniprot ID S0BBR6 ￫UniprotKB
S-S bonds 3:133
label_asym_ids of heme S
Available structure PDB
Chain F-1 heme  
auth_asym_id F
Residue indices (Uniprot) 1-144 (17-160)
Uniprot ID S0BBR6 ￫UniprotKB
S-S bonds 3:133
label_asym_ids of heme S-1
Available structure PDB
Chain F-2 heme  
auth_asym_id F
Residue indices (Uniprot) 1-144 (17-160)
Uniprot ID S0BBR6 ￫UniprotKB
S-S bonds 3:133
label_asym_ids of heme S-2
Available structure PDB
Chain G heme  
auth_asym_id G
Residue indices (Uniprot) 1-150 (17-166)
Uniprot ID S0BCU7 ￫UniprotKB
S-S bonds 5:136
label_asym_ids of heme V
Available structure PDB
Chain G-1 heme  
auth_asym_id G
Residue indices (Uniprot) 1-150 (17-166)
Uniprot ID S0BCU7 ￫UniprotKB
S-S bonds 5:136
label_asym_ids of heme V-1
Available structure PDB
Chain G-2 heme  
auth_asym_id G
Residue indices (Uniprot) 1-150 (17-166)
Uniprot ID S0BCU7 ￫UniprotKB
S-S bonds 5:136
label_asym_ids of heme V-2
Available structure PDB
Chain H heme  
auth_asym_id H
Residue indices (Uniprot) 1-149 (20-168)
Missing residues 25GLY-26ALA
Structural gaps Exists
Uniprot ID S0BAP9 ￫UniprotKB
S-S bonds 4:136
label_asym_ids of heme X
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain H-1 heme  
auth_asym_id H
Residue indices (Uniprot) 1-149 (20-168)
Missing residues 25GLY-26ALA
Structural gaps Exists
Uniprot ID S0BAP9 ￫UniprotKB
S-S bonds 4:136
label_asym_ids of heme X-1
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain H-2 heme  
auth_asym_id H
Residue indices (Uniprot) 1-149 (20-168)
Missing residues 25GLY-26ALA
Structural gaps Exists
Uniprot ID S0BAP9 ￫UniprotKB
S-S bonds 4:136
label_asym_ids of heme X-2
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å