Danish

PDB ID: pdb_00008c29

Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea abies) at 2.8 Angstrom resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2022-12-21

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	46
label_asym_ids of protein	46 chains (4 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, V, W, X, Y, Z
label_asym_ids of heme	RK SD
label_asym_ids of the others	show AB (BCR), AC (BCR), AD (LNL), AE (CHL), AF (CHL), AG (LUT), AH (3PH), AI (CLA), AJ (LMG), AK (LNL), AL (CHL), AM (CLA), AN (CLA), AO (CLA), BB (SQD), BC (LMG), BD (LNL), BE (CHL), BF (CHL), BG (NEX), BH (XAT), BI (BCR), BJ (PAM), BK (LNL), BL (CLA), BM (CLA), BN (CLA), BO (CHL), CB (LMG), CC (PAM), CD (LNL), CE (CLA), CF (CHL), CG (XAT), CH (CHL), CI (SQD), CJ (LNL), CK (LNL), CL (CLA), CM (LUT), CN (CLA), CO (CHL), DB (3PH), DC (LNL), DD (LNL), DE (CLA), DF (CHL), DG (LHG), DH (CLA), DI (3PH), DJ (LNL), DK (LNL), DL (CLA), DM (LUT), DN (CHL), DO (CHL), EB (PL9), EC (LNL), ED (VIV), EE (CLA), EF (CLA), EG (LMG), EH (CLA), EI (PL9), EJ (LNL), EK (LNL), EL (CLA), EM (XAT), EN (CHL), EO (CHL), FB (LHG), FC (LNL), FD (3PH), FE (CLA), FF (CLA), FG (NEX), FH (CLA), FI (LHG), FJ (LNL), FK (LMG), FL (CLA), FM (NEX), FN (CHL), FO (CLA), GB (LNL), GC (LNL), GD (LMG), GE (CLA), GF (CLA), GG (CHL), GH (CHL), GI (LNL), GJ (DGA), GK (BCT), GL (LUT), GM (LHG), GN (CLA), GO (CLA), HB (LNL), HC (LMG), HD (BCT), HE (LUT), HF (CLA), HG (CLA), HH (CHL), HI (CLA), HJ (LHG), HK (PHO), HL (LUT), HM (XAT), HN (CLA), HO (CLA), IB (CLA), IC (CLA), ID (PHO), IE (LUT), IF (CLA), IG (CLA), IH (CHL), II (CLA), IJ (LMG), IK (3PH), IL (NEX), IM (CLA), IN (CLA), IO (CLA), JB (CLA), JC (CLA), JD (3PH), JE (NEX), JF (LUT), JG (CLA), JH (CHL), JI (CLA), JJ (CLA), JK (LHG), JL (LHG), JM (CLA), JN (CLA), JO (CLA), KB (CLA), KC (CLA), KD (LHG), KE (LHG), KF (LUT), KG (CHL), KH (CLA), KI (CLA), KJ (CLA), KK (CLA), KL (CHL), KM (CLA), KN (CLA), KO (LUT), LB (CLA), LC (CLA), LD (CLA), LE (XAT), LF (NEX), LG (CHL), LH (CLA), LI (CLA), LJ (CLA), LK (CLA), LL (BCR), LM (CLA), LN (CLA), LO (LUT), MB (CLA), MC (CLA), MD (CLA), ME (CHL), MF (LHG), MG (CHL), MH (CLA), MI (CLA), MJ (CLA), MK (PL9), ML (LNL), MM (CHL), MN (LUT), MO (LHG), NB (CLA), NC (CLA), ND (PL9), NE (BCR), NF (XAT), NG (CLA), NH (CLA), NI (CLA), NJ (CLA), NK (LHG), NL (BCR), NM (CHL), NN (LUT), NO (BCR), OB (CLA), OC (CLA), OD (LHG), OE (DGD), OF (CLA), OG (CLA), OH (CLA), OI (CLA), OJ (CLA), OK (LMG), OL (CHL), OM (CHL), ON (LHG), PB (CLA), PC (CLA), PD (LMG), PE (LNL), PF (CLA), PG (CLA), PH (LUT), PI (CLA), PJ (CLA), PK (BCR), PL (CLA), PM (CLA), PN (NEX), QB (CLA), QC (CLA), QD (DGA), QE (BCR), QF (CLA), QG (CLA), QH (LUT), QI (CLA), QJ (CLA), QK (DGD), QL (CLA), QM (CLA), QN (3PH), RB (CLA), RC (CLA), RD (BCR), RE (SQD), RF (CLA), RG (CLA), RH (NEX), RI (CLA), RJ (CLA), RL (CLA), RM (CLA), RN (BCR), SB (CLA), SC (CLA), SE (3PH), SF (CHL), SG (CLA), SH (LHG), SI (CLA), SJ (CLA), SK (CHL), SL (CHL), SM (CLA), SN (LMG), TB (CLA), TC (CLA), TD (CHL), TE (LHG), TF (CHL), TG (LUT), TH (BCR), TI (CLA), TJ (CLA), TK (CLA), TL (CHL), TM (CLA), TN (3PH), UA (FE2), UB (CLA), UC (CLA), UD (CLA), UE (SQD), UF (CHL), UG (LUT), UH (LNL), UI (CLA), UJ (CLA), UK (CLA), UL (CHL), UM (LUT), UN (3PH), VA (CLA), VB (CLA), VC (BCR), VD (CLA), VE (CHL), VF (CLA), VG (LHG), VH (FE2), VI (CLA), VJ (CLA), VK (CLA), VL (CHL), VM (NEX), VN (VIV), WA (CLA), WB (CLA), WC (DGD), WD (CLA), WE (CLA), WF (CLA), WG (NEX), WH (CLA), WI (CLA), WJ (BCR), WK (CHL), WL (CHL), WM (XAT), WN (XAT), XA (CLA), XB (CLA), XC (MG), XD (CHL), XE (CLA), XF (CLA), XG (3PH), XH (CLA), XI (BCR), XJ (DGD), XK (CHL), XL (CLA), XM (LHG), XN (CHL), YA (PHO), YB (BCR), YC (LNL), YD (CHL), YE (CLA), YF (CLA), YG (BCR), YH (CLA), YI (BCR), YJ (MG), YK (CHL), YL (CLA), YM (LMG), YN (CLA), ZA (CLA), ZB (BCR), ZC (LNL), ZD (CHL), ZE (CHL), ZF (CLA), ZG (3PH), ZH (PHO), ZI (BCR), ZJ (LNL), ZK (CHL), ZL (CLA), ZM (CHL), ZN (CLA)

Each chain information

Showing all 46 chains (4 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	11-334 (1-353)
Mutations (UniProt numbering)	L295F
Missing residues	262TYR-264SER
Structural gaps	Exists
Uniprot ID	P50155 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.10 Å

Chain AA
auth_asym_id	d
Residue indices (Uniprot)	13-353 (1-353)
Mutations (UniProt numbering)	S280L, S312F
Missing residues	227GLY-228ASP:239THR-240GLN
Structural gaps	Exists
Uniprot ID	R4ZGX6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-486 (1-508)
Mutations (UniProt numbering)	S464F
Uniprot ID	R4ZGX1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA heme
auth_asym_id	e
Residue indices (Uniprot)	19-83 (1-83)
Uniprot ID	R4ZGW6 ￫UniprotKB
label_asym_ids of heme	RK
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	24-473 (1-473)
Mutations (UniProt numbering)	P175L, P433L
Missing residues	401LEU-417VAL
Structural gaps	Exists
Uniprot ID	R4ZGZ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.10 Å

Chain CA heme
auth_asym_id	f
Residue indices (Uniprot)	10-39 (1-39)
Uniprot ID	R4ZGT7 ￫UniprotKB
label_asym_ids of heme	RK
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	13-353 (1-353)
Mutations (UniProt numbering)	S280L, S312F
Missing residues	227GLY-228ASP:239THR-240GLN
Structural gaps	Exists
Uniprot ID	R4ZGX6 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain DA
auth_asym_id	g
Residue indices (Uniprot)	57-274 (1-275)
Mutations (UniProt numbering)	L224I, I249L, T261N
Uniprot ID	Q40771 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	19-83 (1-83)
Uniprot ID	R4ZGW6 ￫UniprotKB
label_asym_ids of heme	SD
Available structure	PDB

Chain EA
auth_asym_id	h
Residue indices (Uniprot)	14-75 (1-75)
Uniprot ID	R4ZGS7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	10-39 (1-39)
Uniprot ID	R4ZGT7 ￫UniprotKB
label_asym_ids of heme	SD
Available structure	PDB

Chain FA
auth_asym_id	i
Residue indices (Uniprot)	1-36 (1-36)
Uniprot ID	R4ZGS4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G
auth_asym_id	G
Residue indices (Uniprot)	57-274 (1-275)
Mutations (UniProt numbering)	L224I, I249L, T261N
Uniprot ID	Q40771 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	k
Residue indices (Uniprot)	23-59 (1-59)
Mutations (UniProt numbering)	S31F, S45F
Uniprot ID	R4ZGX8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	H
Residue indices (Uniprot)	14-75 (1-75)
Uniprot ID	R4ZGS7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	l
Residue indices (Uniprot)	3-38 (1-38)
Uniprot ID	R4ZGV2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	I
Residue indices (Uniprot)	1-36 (1-36)
Uniprot ID	R4ZGS4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	m
Residue indices (Uniprot)	2-32 (1-37)
Mutations (UniProt numbering)	P25L
Uniprot ID	A2CHR7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	K
Residue indices (Uniprot)	23-59 (1-59)
Mutations (UniProt numbering)	S31F, S45F
Uniprot ID	R4ZGX8 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	n
Residue indices (Uniprot)	57-274 (1-275)
Mutations (UniProt numbering)	L224I, I249L, T261N
Uniprot ID	Q40771 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	L
Residue indices (Uniprot)	3-38 (1-38)
Uniprot ID	R4ZGV2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	o
Residue indices (Uniprot)	96-341 (1-341)
Structural gaps	Exists
Uniprot ID	A9NRV4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	M
Residue indices (Uniprot)	2-32 (1-37)
Mutations (UniProt numbering)	P25L
Uniprot ID	A2CHR7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	r
Residue indices (Uniprot)	77-298 (56-288)
Mutations (UniProt numbering)	P54A
Missing residues	138GLY-140PRO
Structural gaps	Exists
Uniprot ID	A9NKX0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain M
auth_asym_id	N
Residue indices (Uniprot)	57-274 (1-275)
Mutations (UniProt numbering)	L224I, I249L, T261N
Uniprot ID	Q40771 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain MA
auth_asym_id	s
Residue indices (Uniprot)	81-295 (1-303)
Mutations (UniProt numbering)	A213L
Missing residues	217LEU-220GLU
Structural gaps	Exists
Uniprot ID	A9NKM0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain N
auth_asym_id	O
Residue indices (Uniprot)	96-341 (1-341)
Structural gaps	Exists
Uniprot ID	A9NRV4 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain NA
auth_asym_id	t
Residue indices (Uniprot)	1-31 (1-35)
Uniprot ID	R4ZGU2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	R
Residue indices (Uniprot)	77-298 (1-55)
Mutations (UniProt numbering)	P54A
Missing residues	138GLY-140PRO
Structural gaps	Exists
Uniprot ID	A9NKX0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain OA
auth_asym_id	u
Residue indices (Uniprot)	107-133 (1-133)
Uniprot ID	A9NJW3 ￫UniprotKB
S-S bonds	122:131
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	S
Residue indices (Uniprot)	81-295 (1-303)
Mutations (UniProt numbering)	A213L
Missing residues	217LEU-220GLU
Structural gaps	Exists
Uniprot ID	A9NKM0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.09 Å

Chain PA
auth_asym_id	v
Residue indices (Uniprot)	3-33 (1-33)
Uniprot ID	R4ZGY5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	T
Residue indices (Uniprot)	1-31 (1-35)
Uniprot ID	R4ZGU2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain QA
auth_asym_id	w
Residue indices (Uniprot)	93-146 (1-146)
Mutations (UniProt numbering)	L98M
Uniprot ID	A9NLC2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	U
Residue indices (Uniprot)	107-133 (1-133)
Uniprot ID	A9NJW3 ￫UniprotKB
S-S bonds	122:131
label_asym_ids of heme	None
Available structure	PDB

Chain RA
auth_asym_id	x
Residue indices (Uniprot)	91-124 (1-129)
Mutations (UniProt numbering)	V80A
Uniprot ID	A9NTS2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	V
Residue indices (Uniprot)	3-33 (1-33)
Uniprot ID	R4ZGY5 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain SA
auth_asym_id	y
Residue indices (Uniprot)	57-274 (1-275)
Mutations (UniProt numbering)	L224I, I249L, T261N
Uniprot ID	Q40771 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	W
Residue indices (Uniprot)	93-146 (1-146)
Mutations (UniProt numbering)	L98M
Uniprot ID	A9NLC2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain TA
auth_asym_id	z
Residue indices (Uniprot)	1-62 (1-62)
Mutations (UniProt numbering)	F17L
Uniprot ID	R4ZGT1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	X
Residue indices (Uniprot)	91-124 (1-129)
Mutations (UniProt numbering)	V80A
Uniprot ID	A9NTS2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	Y
Residue indices (Uniprot)	57-274 (1-275)
Mutations (UniProt numbering)	L224I, I249L, T261N
Uniprot ID	Q40771 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	Z
Residue indices (Uniprot)	1-62 (1-62)
Mutations (UniProt numbering)	F17L
Uniprot ID	R4ZGT1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	a
Residue indices (Uniprot)	11-334 (1-353)
Mutations (UniProt numbering)	L295F
Missing residues	262TYR-264SER
Structural gaps	Exists
Uniprot ID	P50155 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.11 Å

Chain Y
auth_asym_id	b
Residue indices (Uniprot)	2-486 (1-508)
Mutations (UniProt numbering)	S464F
Uniprot ID	R4ZGX1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	c
Residue indices (Uniprot)	24-473 (1-473)
Mutations (UniProt numbering)	P175L, P433L
Missing residues	401LEU-417VAL
Structural gaps	Exists
Uniprot ID	R4ZGZ0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.10 Å