Danish
PDB ID:  pdb_00009qef
  • Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: unavailable
  • Deposition date: 2025-03-09
Number of assemblies:  1
Assembly ID:  0  (author_and_software_defined_assembly)    
Structural data including_not_modeled
Oligomeric count 28
label_asym_ids of protein
label_asym_ids of heme
label_asym_ids of the others AB (CDLStructure of CDLCDL ), AC (7PHStructure of 7PH7PH ), AD (PLMStructure of PLMPLM ), BB (TRDStructure of TRDTRD ), BC (CDLStructure of CDLCDL ), BD (CUStructure of CUCU ), CB (CDLStructure of CDLCDL ), CC (7PHStructure of 7PH7PH ), CD (CUStructure of CUCU ), DD (TRDStructure of TRDTRD ), EA (MQ9Structure of MQ9MQ9 ), EC (CDLStructure of CDLCDL ), ED (9YFStructure of 9YF9YF ), FA (WUOStructure of WUOWUO ), FB (CUStructure of CUCU ), FC (CDLStructure of CDLCDL ), FD (9XXStructure of 9XX9XX ), GA (FESStructure of FESFES ), GB (CDLStructure of CDLCDL ), GC (CDLStructure of CDLCDL ), GD (PLMStructure of PLMPLM ), HA (IZLStructure of IZLIZL ), HB (MGStructure of MGMG ), HC (MQ9Structure of MQ9MQ9 ), HD (9XXStructure of 9XX9XX ), IA (9YFStructure of 9YF9YF ), IB (CAStructure of CACA ), JA (7PHStructure of 7PH7PH ), JB (TRDStructure of TRDTRD ), JC (DCQStructure of DCQDCQ ), KB (TRDStructure of TRDTRD ), KC (CDLStructure of CDLCDL ), LA (CDLStructure of CDLCDL ), LB (CUStructure of CUCU ), LC (CDLStructure of CDLCDL ), MA (CDLStructure of CDLCDL ), MB (CUStructure of CUCU ), MC (WUOStructure of WUOWUO ), NA (CDLStructure of CDLCDL ), NB (TRDStructure of TRDTRD ), NC (TRDStructure of TRDTRD ), OA (MQ9Structure of MQ9MQ9 ), OB (9YFStructure of 9YF9YF ), OC (3PEStructure of 3PE3PE ), PB (9XXStructure of 9XX9XX ), PC (CDLStructure of CDLCDL ), QA (MQ9Structure of MQ9MQ9 ), QB (PLMStructure of PLMPLM ), QC (TRDStructure of TRDTRD ), RA (PLMStructure of PLMPLM ), RC (CDLStructure of CDLCDL ), SA (9XXStructure of 9XX9XX ), TA (CDLStructure of CDLCDL ), TB (MQ9Structure of MQ9MQ9 ), UA (WUOStructure of WUOWUO ), UB (WUOStructure of WUOWUO ), UC (CUStructure of CUCU ), VA (CDLStructure of CDLCDL ), VB (MQ9Structure of MQ9MQ9 ), VC (MGStructure of MGMG ), WA (7PHStructure of 7PH7PH ), WB (FESStructure of FESFES ), WC (CAStructure of CACA ), XA (TRDStructure of TRDTRD ), XB (IZLStructure of IZLIZL ), XC (TRDStructure of TRDTRD ), YA (3PEStructure of 3PE3PE ), YB (9YFStructure of 9YF9YF ), YC (TRDStructure of TRDTRD ), ZA (MQ9Structure of MQ9MQ9 ), ZB (7PHStructure of 7PH7PH ), ZC (CDLStructure of CDLCDL )
Each chain information

Showing all 28 chains (6 with heme). Show only chains with heme

Chain A heme  
auth_asym_id O
Residue indices (Uniprot) 72-294 (1-268)
Uniprot ID A0R050 ￫UniprotKB
label_asym_ids of heme CA ,  DA
Available structure PDB
Chain AA  
auth_asym_id A
Residue indices (Uniprot) 5-106 (1-123)
Mutations (UniProt numbering)
Missing residues 66ARG-74ASN
Structural gaps Exists
Uniprot ID A0A653FDI6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å
Chain B  
auth_asym_id M
Residue indices (Uniprot) 41-420 (1-408)
Uniprot ID A0R051 ￫UniprotKB
S-S bonds 351:367
label_asym_ids of heme None
Available structure PDB
Chain BA  
auth_asym_id B
Residue indices (Uniprot) 11-65 (1-65)
Uniprot ID I7FT03 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C heme  
auth_asym_id N
Residue indices (Uniprot) 4-536 (1-546)
Uniprot ID A0R052 ￫UniprotKB
label_asym_ids of heme KA ,  PA
Available structure PDB
Chain D  
auth_asym_id P
Residue indices (Uniprot) 28-100 (2-84)
Uniprot ID A0QVH4 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id S
Residue indices (Uniprot) 17-203 (1-203)
Uniprot ID A0R049 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id T
Residue indices (Uniprot) 1-139 (1-139)
Uniprot ID A0R056 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G heme  
auth_asym_id R
Residue indices (Uniprot) 10-560 (1-555)
Uniprot ID A0A2U9PNL2 ￫UniprotKB
label_asym_ids of heme DB ,  EB
Available structure PDB
Chain H  
auth_asym_id Q
Residue indices (Uniprot) 27-336 (1-341)
Structural gaps Exists
Uniprot ID A0R057 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id U
Residue indices (Uniprot) 2-79 (1-79)
Missing residues 57HIS-68GLY
Structural gaps Exists
Uniprot ID A0R1B6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.13 Å
Chain J  
auth_asym_id V
Residue indices (Uniprot) 15-157 (1-157)
Uniprot ID A0R1B5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id W
Residue indices (Uniprot) 24-182 (1-186)
Missing residues 121ILE-131ASP
Structural gaps Exists
Uniprot ID A0R562 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain L  
auth_asym_id Y
Residue indices (Uniprot) 21-45 (1-236)
Uniprot ID A0QQQ1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain M heme  
auth_asym_id C
Residue indices (Uniprot) 72-294 (1-268)
Uniprot ID A0R050 ￫UniprotKB
label_asym_ids of heme RB ,  SB
Available structure PDB
Chain N  
auth_asym_id G
Residue indices (Uniprot) 41-420 (1-408)
Uniprot ID A0R051 ￫UniprotKB
S-S bonds 351:367
label_asym_ids of heme None
Available structure PDB
Chain O heme  
auth_asym_id H
Residue indices (Uniprot) 4-536 (1-546)
Uniprot ID A0R052 ￫UniprotKB
label_asym_ids of heme DC ,  IC
Available structure PDB
Chain P  
auth_asym_id I
Residue indices (Uniprot) 28-100 (2-84)
Uniprot ID A0QVH4 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id J
Residue indices (Uniprot) 17-203 (1-203)
Uniprot ID A0R049 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id K
Residue indices (Uniprot) 1-139 (1-139)
Uniprot ID A0R056 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S heme  
auth_asym_id L
Residue indices (Uniprot) 10-560 (1-555)
Uniprot ID A0A2U9PNL2 ￫UniprotKB
label_asym_ids of heme SC ,  TC
Available structure PDB
Chain T  
auth_asym_id X
Residue indices (Uniprot) 27-336 (1-341)
Missing residues 169SER-186ARG
Structural gaps Exists
Uniprot ID A0R057 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.10 Å
Chain U  
auth_asym_id Z
Residue indices (Uniprot) 1-79 (1-79)
Missing residues 57HIS-68GLY
Structural gaps Exists
Uniprot ID A0R1B6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.14 Å
Chain V  
auth_asym_id a
Residue indices (Uniprot) 15-157 (1-157)
Uniprot ID A0R1B5 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id b
Residue indices (Uniprot) 24-182 (1-186)
Missing residues 122GLN-131ASP
Structural gaps Exists
Uniprot ID A0R562 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain X  
auth_asym_id c
Residue indices (Uniprot) 21-45 (1-236)
Uniprot ID A0QQQ1 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Y  
auth_asym_id E
Residue indices (Uniprot) 1-106 (1-123)
Mutations (UniProt numbering)
Missing residues 66ARG-74ASN
Structural gaps Exists
Uniprot ID A0A653FDI6 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.11 Å
Chain Z  
auth_asym_id F
Residue indices (Uniprot) 11-65 (1-65)
Uniprot ID I7FT03 ￫UniprotKB
label_asym_ids of heme None
Available structure PDB