PDB ID:  pdb_000021wv
  • In situ structure of the C2S2M2L4-type PSII-LHCII supercomplex from Oryza sativa
  • Experimental method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Deposition date: 2026-01-01
Number of assemblies:  1
Assembly ID:  0  (author_defined_assembly)    
Structural data modeled
Oligomeric count 72
label_asym_ids of protein
72 chains (4 with heme) A, AA, AB, B, BA, BB, C, CA, CB, D, DA, DB, E, EA, EB, F, FA, FB, G, GA, GB, H, HA, HB, I, IA, IB, J, JA, JB, K, KA, KB, L, LA, LB, M, MA, MB, N, NA, NB, O, OA, OB, P, PA, PB, Q, QA, QB, R, RA, RB, S, SA, SB, T, TA, TB, U, UA, V, VA, W, WA, X, XA, Y, YA, Z, ZA
label_asym_ids of heme IR VK
label_asym_ids of the others
show AC (CHL), AD (CLA), AE (CLA), AF (CHL), AG (CHL), AH (CHL), AI (DGD), AJ (DGD), AK (LHG), AL (CLA), AM (CHL), AN (CLA), AO (LUT), AP (CLA), AQ (CL), AR (CLA), AS (LHG), AT (LHG), AU (CHL), BC (CHL), BD (CLA), BE (CLA), BF (CHL), BG (CLA), BH (CHL), BI (CLA), BJ (DGD), BK (LHG), BL (CHL), BM (CLA), BN (CLA), BO (LUT), BP (CLA), BQ (CLA), BR (CLA), BS (XAT), BT (PL9), BU (CHL), CC (CLA), CD (LUT), CE (CLA), CF (CLA), CG (CLA), CH (CHL), CI (CLA), CJ (SQD), CK (MGE), CL (CHL), CM (CLA), CN (CLA), CO (LHG), CP (CLA), CQ (CLA), CR (BCT), CS (BCR), CT (CLA), CU (CLA), DC (CLA), DD (LUT), DE (CHL), DF (CLA), DG (CLA), DH (CLA), DI (CLA), DJ (SQD), DK (LHG), DL (CHL), DM (CLA), DN (CLA), DO (DGD), DP (CLA), DQ (CLA), DR (BCR), DS (BCR), DT (CLA), DU (CLA), EC (CLA), ED (LHG), EE (CLA), EF (CLA), EG (CLA), EH (CLA), EI (CLA), EJ (BCR), EK (LHG), EL (CHL), EM (CHL), EN (CHL), EO (LHG), EP (CLA), EQ (CLA), ER (PL9), ES (BCR), ET (CLA), EU (CLA), FC (CLA), FD (CHL), FE (LUT), FF (CLA), FG (CHL), FH (CLA), FI (CLA), FJ (CLA), FK (LHG), FL (CHL), FM (CHL), FN (CLA), FO (LHG), FP (CLA), FQ (CLA), FR (SQD), FS (LHG), FT (CHL), FU (CLA), GC (LUT), GD (CLA), GE (LHG), GF (CLA), GG (CLA), GH (CLA), GI (CLA), GJ (CLA), GK (CLA), GL (CLA), GM (CHL), GN (LUT), GO (LHG), GP (CLA), GQ (CLA), GR (PL9), GS (MGE), GT (CHL), GU (CLA), HC (LUT), HD (CHL), HE (CHL), HF (CHL), HG (LUT), HH (LUT), HI (CLA), HJ (CLA), HK (CLA), HL (CLA), HM (CHL), HN (XAT), HO (3PH), HP (CLA), HQ (CLA), HR (LHG), HS (BCR), HT (CHL), HU (CLA), IC (VIV), ID (CHL), IE (CHL), IF (LUT), IG (LHG), IH (LUT), II (CLA), IJ (CLA), IK (BCT), IL (CLA), IM (CHL), IN (LHG), IO (BCR), IP (CLA), IQ (CLA), IS (SQD), IT (CLA), IU (LUT), JC (LHG), JD (CHL), JE (CHL), JF (CHL), JG (CHL), JH (VIV), JI (CLA), JJ (CLA), JK (CLA), JL (CLA), JM (CLA), JN (LHG), JO (BCR), JP (CLA), JQ (CLA), JR (CHL), JS (SQD), JT (CLA), JU (LUT), KC (LHG), KD (CHL), KE (CHL), KF (CHL), KG (CHL), KH (LHG), KI (CLA), KJ (CLA), KK (CLA), KL (CLA), KM (CLA), KN (LHG), KO (LHG), KP (CLA), KQ (CLA), KR (CLA), KS (CHL), KT (CLA), KU (LHG), LC (CLA), LD (CHL), LE (CHL), LF (CLA), LG (CHL), LH (CLA), LI (CLA), LJ (CLA), LK (BCR), LL (LUT), LM (CLA), LN (SQD), LO (OEX), LP (CLA), LQ (CLA), LR (CLA), LS (CLA), LT (CLA), LU (MGE), MC (LHG), MD (CLA), ME (CLA), MF (CHL), MG (CHL), MH (LHG), MI (CLA), MJ (CLA), MK (PL9), ML (LUT), MM (CLA), MN (LHG), MO (FE2), MP (CLA), MQ (CLA), MR (CLA), MS (CLA), MT (CLA), MU (LHG), NC (DGD), ND (CLA), NE (CLA), NF (CHL), NG (CHL), NH (FE2), NI (CLA), NJ (CLA), NK (LHG), NL (XAT), NM (CLA), NN (CHL), NO (CL), NP (CLA), NQ (CLA), NR (CHL), NS (CLA), NT (CHL), NU (LHG), OC (LHG), OD (CLA), OE (CLA), OF (CHL), OG (CLA), OH (CL), OI (CLA), OJ (CLA), OK (LHG), OL (LHG), OM (LUT), ON (CLA), OO (CLA), OP (BCR), OQ (BCR), OR (CHL), OS (CHL), OT (CLA), OU (SQD), PC (CLA), PD (CLA), PE (CLA), PF (CHL), PG (CLA), PH (CL), PI (CLA), PJ (CLA), PK (LHG), PL (XAT), PM (LHG), PN (CLA), PO (CLA), PP (BCR), PQ (SQD), PR (CHL), PS (CHL), PT (LUT), PU (LHG), QC (CHL), QD (CLA), QE (CLA), QF (CLA), QG (CLA), QH (CLA), QI (CLA), QJ (CLA), QK (SQD), QL (BCR), QM (LHG), QN (CHL), QO (PHO), QP (BCR), QQ (DGD), QR (CHL), QS (CHL), QT (XAT), QU (LHG), RC (CHL), RD (CLA), RE (CLA), RF (CLA), RG (CLA), RH (PHO), RI (BCR), RJ (CLA), RK (SQD), RL (LHG), RM (LHG), RN (CHL), RO (CLA), RP (SQD), RQ (DGD), RR (CHL), RS (CHL), RT (LHG), RU (LHG), SC (CHL), SD (CLA), SE (CLA), SF (CLA), SG (CLA), SH (PHO), SI (BCR), SJ (LNL), SK (LHG), SL (BCR), SM (PL9), SN (CHL), SO (BCR), SP (SQD), SQ (DGD), SR (CLA), SS (CHL), ST (SQD), TC (CHL), TD (CLA), TE (BCR), TF (CLA), TG (CLA), TH (CLA), TI (BCR), TJ (LNL), TK (LHG), TL (LHG), TM (CLA), TN (CLA), TO (SQD), TP (LHG), TQ (LHG), TR (CLA), TS (CLA), TT (LHG), UB (CLA), UC (CHL), UD (CHL), UE (CLA), UF (CLA), UG (CLA), UH (OEX), UI (SQD), UJ (DGD), UK (PL9), UL (BCR), UM (CHL), UN (CLA), UO (SQD), UP (LHG), UQ (LHG), UR (CLA), US (CLA), UT (LHG), VB (CLA), VC (CLA), VD (CHL), VE (CLA), VF (CLA), VG (CLA), VH (BCR), VI (LHG), VJ (DGD), VL (LHG), VM (CHL), VN (CLA), VO (PL9), VP (LHG), VQ (LHG), VR (CLA), VS (CLA), VT (CHL), WB (CLA), WC (CLA), WD (CHL), WE (CLA), WF (CLA), WG (CLA), WH (PL9), WI (SQD), WJ (DGD), WK (LHG), WL (LHG), WM (CHL), WN (CLA), WO (LHG), WP (LHG), WQ (LHG), WR (CLA), WS (CLA), WT (CLA), XB (CHL), XC (CLA), XD (CHL), XE (CLA), XF (CHL), XG (CLA), XH (SQD), XI (MGE), XJ (LHG), XK (CHL), XL (LHG), XM (CLA), XN (CLA), XO (BCR), XP (DGD), XQ (CLA), XR (LUT), XS (CLA), XT (CLA), YB (CHL), YC (CLA), YD (CLA), YE (CHL), YF (CHL), YG (CHL), YH (SQD), YI (MGE), YJ (LHG), YK (CLA), YL (SQD), YM (CLA), YN (CLA), YO (CLA), YP (LHG), YQ (PHO), YR (LUT), YS (LUT), YT (CLA), ZB (CHL), ZC (CLA), ZD (CLA), ZE (CHL), ZF (CHL), ZG (CHL), ZH (SQD), ZI (DGD), ZJ (SQD), ZK (CLA), ZL (LHG), ZM (CLA), ZN (CLA), ZO (CLA), ZP (LNL), ZQ (SQD), ZR (XAT), ZS (LHG), ZT (CHL)
Each chain information

Showing all 72 chains (4 with heme). Show only chains with heme

Chain A  
auth_asym_id 00
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain AA  
auth_asym_id 1H
Residue indices (Uniprot) 13-72 (13-72)
Uniprot ID P0C420 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain AB  
auth_asym_id 1i
Residue indices (Uniprot) 1-34 (1-34)
Uniprot ID P0C405 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain B  
auth_asym_id 01
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BA  
auth_asym_id 1I
Residue indices (Uniprot) 1-34 (1-34)
Uniprot ID P0C405 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain BB  
auth_asym_id 1j
Residue indices (Uniprot) 6-40 (6-40)
Uniprot ID P0C414 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain C  
auth_asym_id 02
Residue indices (Uniprot) 14-231 (42-260)
Missing residues 89GLY-90VAL:114GLY-115ASN
Structural gaps Exists
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.15 Å
Chain CA  
auth_asym_id 1J
Residue indices (Uniprot) 6-40 (6-40)
Uniprot ID P0C414 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain CB  
auth_asym_id 1k
Residue indices (Uniprot) 25-61 (25-61)
Uniprot ID P0C408 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain D  
auth_asym_id 03
Residue indices (Uniprot) 23-242 (46-265)
Uniprot ID B7E6H8 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain DA  
auth_asym_id 1K
Residue indices (Uniprot) 25-61 (25-61)
Uniprot ID P0C408 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain DB  
auth_asym_id 1l
Residue indices (Uniprot) 4-38 (3-38)
Uniprot ID P60137 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain E  
auth_asym_id 04
Residue indices (Uniprot) 8-207 (47-251)
Uniprot ID Q7XV11 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain EA  
auth_asym_id 1L
Residue indices (Uniprot) 3-38 (3-38)
Uniprot ID P60137 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain EB  
auth_asym_id 1m
Residue indices (Uniprot) 1-33 (1-33)
Uniprot ID P0C411 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain F  
auth_asym_id 05
Residue indices (Uniprot) 13-228 (42-260)
Missing residues 45GLY-50GLY
Structural gaps Exists
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.19 Å
Chain FA  
auth_asym_id 1M
Residue indices (Uniprot) 1-32 (1-33)
Uniprot ID P0C411 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain FB  
auth_asym_id 1n
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain G  
auth_asym_id 06
Residue indices (Uniprot) 14-231 (42-260)
Missing residues 114GLY-124ILE
Structural gaps Exists
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.25 Å
Chain GA  
auth_asym_id 1N
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain GB  
auth_asym_id 1o
Residue indices (Uniprot) 1-247 (87-333)
Missing residues 63GLU-72GLU
Structural gaps Exists
Uniprot ID Q943W1 →UniprotKB
label_asym_ids of heme None
Available structure PDB and Modeled
RMSD of experimental residues after energy minimization 0.12 Å
Chain H  
auth_asym_id 07
Residue indices (Uniprot) 23-242 (46-265)
Uniprot ID B7E6H8 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain HA  
auth_asym_id 1O
Residue indices (Uniprot) 1-247 (87-333)
Uniprot ID Q943W1 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain HB  
auth_asym_id 1p
Residue indices (Uniprot) 1-186 (69-254)
Uniprot ID Q8GTK4 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain I  
auth_asym_id 08
Residue indices (Uniprot) 5-209 (47-251)
Uniprot ID Q7XV11 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain IA  
auth_asym_id 1P
Residue indices (Uniprot) 1-186 (69-254)
Uniprot ID Q8GTK4 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain IB  
auth_asym_id 1r
Residue indices (Uniprot) 11-244 (54-287)
Uniprot ID Q6Z411 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain J  
auth_asym_id 09
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain JA  
auth_asym_id 1R
Residue indices (Uniprot) 11-244 (54-287)
Uniprot ID Q6Z411 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain JB  
auth_asym_id 1s
Residue indices (Uniprot) 20-236 (58-275)
Uniprot ID Q53N83 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain K  
auth_asym_id 11
Residue indices (Uniprot) 14-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain KA  
auth_asym_id 1S
Residue indices (Uniprot) 19-236 (58-275)
Uniprot ID Q53N83 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain KB  
auth_asym_id 1t
Residue indices (Uniprot) 1-31 (1-32)
Uniprot ID P0C427 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain L  
auth_asym_id 12
Residue indices (Uniprot) 7-228 (42-263)
Uniprot ID Q10HD0 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain LA  
auth_asym_id 1T
Residue indices (Uniprot) 1-32 (1-32)
Uniprot ID P0C427 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain LB  
auth_asym_id 1u
Residue indices (Uniprot) 107-133 (93-119)
Uniprot ID Q0E032 →UniprotKB
S-S bonds 122:131
label_asym_ids of heme None
Available structure PDB
Chain M  
auth_asym_id 13
Residue indices (Uniprot) 14-231 (47-264)
Uniprot ID P12330 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain MA  
auth_asym_id 1U
Residue indices (Uniprot) 107-133 (93-119)
Uniprot ID Q0E032 →UniprotKB
S-S bonds 122:131
label_asym_ids of heme None
Available structure PDB
Chain MB  
auth_asym_id 1v
Residue indices (Uniprot) 13-111 (33-137)
Uniprot ID Q8H4P7 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain N  
auth_asym_id 14
Residue indices (Uniprot) 14-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain NA  
auth_asym_id 1V
Residue indices (Uniprot) 14-111 (33-137)
Uniprot ID Q8H4P7 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain NB  
auth_asym_id 1w
Residue indices (Uniprot) 1-44 (70-123)
Uniprot ID Q5ZBY9 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain O  
auth_asym_id 15
Residue indices (Uniprot) 7-228 (42-263)
Uniprot ID Q10HD0 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain OA  
auth_asym_id 1W
Residue indices (Uniprot) 1-54 (70-123)
Uniprot ID Q5ZBY9 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain OB  
auth_asym_id 1x
Residue indices (Uniprot) 46-83 (78-116)
Uniprot ID Q7EXX2 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain P  
auth_asym_id 16
Residue indices (Uniprot) 14-231 (47-264)
Uniprot ID P12330 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain PA  
auth_asym_id 1X
Residue indices (Uniprot) 45-83 (78-116)
Uniprot ID Q7EXX2 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain PB  
auth_asym_id 1y
Residue indices (Uniprot) 3-36 (92-127)
Uniprot ID Q6ZJ41 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Q  
auth_asym_id 17
Residue indices (Uniprot) 14-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain QA  
auth_asym_id 1Y
Residue indices (Uniprot) 2-35 (92-127)
Uniprot ID Q6ZJ41 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain QB  
auth_asym_id 1z
Residue indices (Uniprot) 1-62 (1-62)
Uniprot ID P0C429 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain R  
auth_asym_id 18
Residue indices (Uniprot) 7-228 (42-263)
Uniprot ID Q10HD0 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain RA  
auth_asym_id 1Z
Residue indices (Uniprot) 1-62 (1-62)
Uniprot ID P0C429 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain RB  
auth_asym_id 20
Residue indices (Uniprot) 14-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain S  
auth_asym_id 19
Residue indices (Uniprot) 14-231 (47-264)
Uniprot ID P12330 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain SA  
auth_asym_id 1a
Residue indices (Uniprot) 11-343 (11-344)
Uniprot ID P0C432 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain SB  
auth_asym_id 21
Residue indices (Uniprot) 7-228 (42-263)
Uniprot ID Q10HD0 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain T  
auth_asym_id 1A
Residue indices (Uniprot) 11-344 (11-344)
Uniprot ID P0C432 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain TA  
auth_asym_id 1b
Residue indices (Uniprot) 2-504 (2-504)
Uniprot ID P0C362 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain TB  
auth_asym_id 22
Residue indices (Uniprot) 14-231 (47-264)
Uniprot ID P12330 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain U  
auth_asym_id 1B
Residue indices (Uniprot) 2-504 (2-504)
Uniprot ID P0C362 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain UA  
auth_asym_id 1c
Residue indices (Uniprot) 24-473 (24-473)
Uniprot ID P0C365 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain V  
auth_asym_id 1C
Residue indices (Uniprot) 24-473 (24-473)
Uniprot ID P0C365 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain VA  
auth_asym_id 1d
Residue indices (Uniprot) 13-353 (13-353)
Uniprot ID P0C435 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain W  
auth_asym_id 1D
Residue indices (Uniprot) 14-353 (13-353)
Uniprot ID P0C435 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain WA heme  
auth_asym_id 1e
Residue indices (Uniprot) 8-82 (8-82)
Uniprot ID P0C368 →UniprotKB
label_asym_ids of heme IR
Available structure PDB
Chain X heme  
auth_asym_id 1E
Residue indices (Uniprot) 8-82 (8-82)
Uniprot ID P0C368 →UniprotKB
label_asym_ids of heme VK
Available structure PDB
Chain XA heme  
auth_asym_id 1f
Residue indices (Uniprot) 10-39 (5-39)
Uniprot ID P0C401 →UniprotKB
label_asym_ids of heme IR
Available structure PDB
Chain Y heme  
auth_asym_id 1F
Residue indices (Uniprot) 5-39 (5-39)
Uniprot ID P0C401 →UniprotKB
label_asym_ids of heme VK
Available structure PDB
Chain YA  
auth_asym_id 1g
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain Z  
auth_asym_id 1G
Residue indices (Uniprot) 13-231 (42-260)
Uniprot ID P12331 →UniprotKB
label_asym_ids of heme None
Available structure PDB
Chain ZA  
auth_asym_id 1h
Residue indices (Uniprot) 13-72 (13-72)
Uniprot ID P0C420 →UniprotKB
label_asym_ids of heme None
Available structure PDB