Danish

PDB ID: pdb_00005mdx

Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2016-11-13

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	50
label_asym_ids of protein	50 chains (4 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, VA, W, WA, X, XA, Y, Z
label_asym_ids of heme	JC JD
label_asym_ids of the others	show AB (CLA), AC (CLA), AD (CLA), AE (CHL), AF (CHL), AG (CLA), AH (CLA), AI (CLA), AJ (CHL), AK (CLA), AL (CLA), AM (CLA), AN (CLA), BB (PHO), BC (CLA), BD (CLA), BE (CHL), BF (CHL), BG (CHL), BH (CHL), BI (CLA), BJ (CLA), BK (CLA), BL (CHL), BM (CLA), BN (CLA), CB (CLA), CC (CLA), CD (CLA), CE (CLA), CF (CHL), CG (CHL), CH (CHL), CI (CHL), CJ (CLA), CK (CHL), CL (CLA), CM (CLA), DB (CLA), DC (CLA), DD (CLA), DE (CLA), DF (CHL), DG (CHL), DH (CHL), DI (CHL), DJ (CLA), DK (CHL), DL (CLA), DM (CHL), EB (CLA), EC (CLA), ED (CLA), EE (CLA), EF (CLA), EG (CHL), EH (CLA), EI (CHL), EJ (CHL), EK (CLA), EL (CLA), EM (CHL), FB (CLA), FC (CLA), FD (CLA), FE (CLA), FF (CLA), FG (CHL), FH (CLA), FI (CHL), FJ (CHL), FK (CLA), FL (CHL), FM (CLA), GB (CLA), GC (PHO), GD (PHO), GE (CLA), GF (CLA), GG (CLA), GH (CLA), GI (CHL), GJ (CHL), GK (CLA), GL (CHL), GM (CLA), HB (CLA), HC (CLA), HD (CLA), HE (CLA), HF (CLA), HG (CLA), HH (CLA), HI (CLA), HJ (CHL), HK (CHL), HL (CHL), HM (CLA), IB (CLA), IC (CLA), ID (CLA), IE (CHL), IF (CLA), IG (CLA), IH (CLA), II (CLA), IJ (CHL), IK (CHL), IL (CHL), IM (CHL), JB (CLA), JE (CLA), JF (CHL), JG (CLA), JH (CLA), JI (CLA), JJ (CLA), JK (CHL), JL (CHL), JM (CHL), KB (CLA), KC (FE2), KD (CLA), KE (CLA), KF (CLA), KG (CLA), KH (CHL), KI (CLA), KJ (CLA), KK (CHL), KL (CLA), KM (CHL), LB (CLA), LC (CLA), LD (CLA), LE (CLA), LF (CLA), LG (CLA), LH (CLA), LI (CLA), LJ (CLA), LK (CLA), LL (CLA), LM (CHL), MB (CLA), MC (CLA), MD (CLA), ME (CHL), MF (CLA), MG (CLA), MH (CLA), MI (CHL), MJ (CLA), MK (CLA), ML (CLA), MM (CLA), NB (CLA), NC (PHO), ND (CLA), NE (CHL), NF (CHL), NG (CLA), NH (CLA), NI (CLA), NJ (CLA), NK (CLA), NL (CLA), NM (CLA), OB (CLA), OC (CLA), OD (CLA), OE (CHL), OF (CHL), OG (CHL), OH (CHL), OI (CLA), OJ (CHL), OK (CLA), OL (CLA), OM (CLA), PB (CLA), PC (CLA), PD (CLA), PE (CLA), PF (CHL), PG (CHL), PH (CHL), PI (CLA), PJ (CHL), PK (CLA), PL (CHL), PM (CLA), QB (CLA), QC (CLA), QD (CLA), QE (CLA), QF (CHL), QG (CHL), QH (CHL), QI (CHL), QJ (CLA), QK (CLA), QL (CHL), QM (CLA), RB (CLA), RC (CLA), RD (CLA), RE (CLA), RF (CHL), RG (CLA), RH (CHL), RI (CHL), RJ (CLA), RK (CHL), RL (CLA), RM (CLA), SB (CLA), SC (CLA), SD (CLA), SE (CLA), SF (CLA), SG (CLA), SH (CHL), SI (CHL), SJ (CLA), SK (CLA), SL (CLA), SM (CHL), TB (CLA), TC (CLA), TD (CLA), TE (CLA), TF (CLA), TG (CLA), TH (CLA), TI (CHL), TJ (CHL), TK (CLA), TL (CLA), TM (CLA), UB (CLA), UC (CLA), UD (CLA), UE (CLA), UF (CLA), UG (CLA), UH (CLA), UI (CHL), UJ (CHL), UK (CLA), UL (CHL), UM (CLA), VB (CLA), VC (CLA), VD (CLA), VE (CHL), VF (CLA), VG (CLA), VH (CLA), VI (CLA), VJ (CHL), VK (CHL), VL (CHL), VM (CLA), WB (CLA), WC (CLA), WD (CLA), WE (CLA), WF (CLA), WG (CLA), WH (CLA), WI (CLA), WJ (CHL), WK (CHL), WL (CHL), WM (CHL), XB (CLA), XC (CLA), XD (CLA), XE (CLA), XF (CHL), XG (CHL), XH (CLA), XI (CLA), XJ (CLA), XK (CHL), XL (CHL), XM (CHL), YA (FE2), YB (CLA), YC (CLA), YD (CLA), YE (CLA), YF (CLA), YG (CLA), YH (CHL), YI (CLA), YJ (CLA), YK (CHL), YL (CLA), YM (CHL), ZA (CLA), ZB (CLA), ZC (CLA), ZD (CHL), ZE (CHL), ZF (CLA), ZG (CLA), ZH (CLA), ZI (CLA), ZJ (CLA), ZK (CLA), ZL (CLA), ZM (CHL)

Each chain information

Showing all 50 chains (4 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	11-340 (2-344)
Structural gaps	Exists
Uniprot ID	P83755 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA
auth_asym_id	o
Residue indices (Uniprot)	91-332 (86-332)
Structural gaps	Exists
Uniprot ID	P23321 ￫UniprotKB
S-S bonds	114:137
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-479 (2-508)
Uniprot ID	P56777 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	x
Residue indices (Uniprot)	80-111 (1-116)
Uniprot ID	Q9SKI3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	24-472 (15-473)
Missing residues	401LEU-416ALA
Structural gaps	Exists
Uniprot ID	P56778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain CA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	P56790 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	16-351 (2-353)
Uniprot ID	P56761 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	w
Residue indices (Uniprot)	83-128 (80-133)
Uniprot ID	Q39194 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	10-81 (1-83)
Missing residues	21VAL-21VAL
Structural gaps	Exists
Uniprot ID	P56779 ￫UniprotKB
label_asym_ids of heme	JC
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain EA
auth_asym_id	t
Residue indices (Uniprot)	1-29 (1-33)
Uniprot ID	P61839 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	11-39 (1-39)
Uniprot ID	P62095 ￫UniprotKB
label_asym_ids of heme	JC
Available structure	PDB

Chain FA
auth_asym_id	c
Residue indices (Uniprot)	24-472 (15-473)
Missing residues	401LEU-416ALA
Structural gaps	Exists
Uniprot ID	P56778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å

Chain G
auth_asym_id	H
Residue indices (Uniprot)	14-65 (2-73)
Uniprot ID	P56780 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	R
Residue indices (Uniprot)	56-288 (41-290)
Structural gaps	Exists
Uniprot ID	Q07473 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-36)
Uniprot ID	P62100 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	S
Residue indices (Uniprot)	59-272 (49-280)
Uniprot ID	Q9XF89 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	K
Residue indices (Uniprot)	25-60 (25-61)
Uniprot ID	P56782 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	G
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	L
Residue indices (Uniprot)	3-38 (1-38)
Uniprot ID	P60129 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	N
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	M
Residue indices (Uniprot)	4-32 (1-34)
Uniprot ID	P62109 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	Y
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	O
Residue indices (Uniprot)	91-332 (86-332)
Structural gaps	Exists
Uniprot ID	P23321 ￫UniprotKB
S-S bonds	114:137
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	r
Residue indices (Uniprot)	56-288 (41-290)
Structural gaps	Exists
Uniprot ID	Q07473 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	T
Residue indices (Uniprot)	1-29 (1-33)
Uniprot ID	P61839 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain MA
auth_asym_id	s
Residue indices (Uniprot)	59-272 (49-280)
Uniprot ID	Q9XF89 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	W
Residue indices (Uniprot)	83-128 (80-133)
Uniprot ID	Q39194 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain NA
auth_asym_id	g
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	X
Residue indices (Uniprot)	80-111 (1-116)
Uniprot ID	Q9SKI3 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain OA
auth_asym_id	n
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	Z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	P56790 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain PA
auth_asym_id	y
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	a
Residue indices (Uniprot)	11-340 (2-344)
Uniprot ID	P83755 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain QA
auth_asym_id	1
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	b
Residue indices (Uniprot)	2-479 (2-508)
Uniprot ID	P56777 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain RA
auth_asym_id	2
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	d
Residue indices (Uniprot)	16-351 (2-353)
Uniprot ID	P56761 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain SA
auth_asym_id	3
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T heme
auth_asym_id	e
Residue indices (Uniprot)	10-81 (1-83)
Missing residues	21VAL-21VAL
Structural gaps	Exists
Uniprot ID	P56779 ￫UniprotKB
label_asym_ids of heme	JD
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain TA
auth_asym_id	4
Residue indices (Uniprot)	54-257 (48-257)
Uniprot ID	Q9LMQ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U heme
auth_asym_id	f
Residue indices (Uniprot)	11-39 (1-39)
Uniprot ID	P62095 ￫UniprotKB
label_asym_ids of heme	JD
Available structure	PDB

Chain UA
auth_asym_id	5
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	h
Residue indices (Uniprot)	14-65 (2-73)
Uniprot ID	P56780 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain VA
auth_asym_id	6
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	i
Residue indices (Uniprot)	1-35 (1-36)
Uniprot ID	P62100 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain WA
auth_asym_id	7
Residue indices (Uniprot)	48-266 (44-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	k
Residue indices (Uniprot)	25-60 (25-61)
Uniprot ID	P56782 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain XA
auth_asym_id	8
Residue indices (Uniprot)	54-257 (48-257)
Uniprot ID	Q9LMQ2 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	l
Residue indices (Uniprot)	3-38 (1-38)
Uniprot ID	P60129 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	m
Residue indices (Uniprot)	4-32 (1-34)
Uniprot ID	P62109 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB