Danish

PDB ID: pdb_00008ugn

In-situ structure of typeO supercomplex in respiratory chain (composite)
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2023-10-05

Number of assemblies: 1

Assembly ID: 0 (author_and_software_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	140
label_asym_ids of protein	140 chains (6 with heme) A, AA, AB, AC, AD, AE, B, BA, BB, BC, BD, BE, C, CA, CB, CC, CD, CE, D, DA, DB, DC, DD, DE, E, EA, EB, EC, ED, EE, F, FA, FB, FC, FD, FE, G, GA, GB, GC, GD, GE, H, HA, HB, HC, HD, HE, I, IA, IB, IC, ID, IE, J, JA, JB, JC, JD, JE, K, KA, KB, KC, KD, L, LA, LB, LC, LD, M, MA, MB, MC, MD, N, NA, NB, NC, ND, O, OA, OB, OC, OD, P, PA, PB, PC, PD, Q, QA, QB, QC, QD, R, RA, RB, RC, RD, S, SA, SB, SC, SD, T, TA, TB, TC, TD, U, UA, UB, UC, UD, V, VA, VB, VC, VD, W, WA, WB, WC, WD, X, XA, XB, XC, XD, Y, YA, YB, YC, YD, Z, ZA, ZB, ZC, ZD
label_asym_ids of heme	DL EL HH IH LH TG UG VH WH YG
label_asym_ids of the others	show AF (SF4), AG (3PE), AH (FES), AI (PSC), AJ (PC1), AK (CDL), AL (CDL), AM (PGV), BF (SF4), BG (3PE), BH (3PE), BI (PGV), BJ (FES), BK (GTP), BL (PGV), BM (PGV), CF (PC1), CG (3PE), CH (CDL), CI (CDL), CJ (FMN), CK (MG), CL (PGV), CM (PGV), DF (AYA), DG (3PE), DH (PC1), DI (CUA), DJ (SF4), DK (PC1), DM (PGV), EF (3PE), EG (3PE), EH (3PE), EI (PGV), EJ (SF4), EK (NDP), FF (3PE), FG (3PE), FH (CDL), FI (PGV), FJ (SF4), FK (3PE), FL (CU), GF (CDL), GG (PC1), GH (3PE), GI (PGV), GJ (FES), GK (ZN), GL (MG), HF (3PE), HG (CDL), HI (PGV), HJ (K), HK (EHZ), HL (NA), IF (PC1), IG (AME), II (PGV), IJ (CDL), IK (CDL), IL (PGV), JF (3PE), JG (CDL), JH (3PE), JI (CDL), JJ (PC1), JK (3PE), JL (PGV), KE (PC1), KF (3PE), KG (PC1), KH (CDL), KI (PGV), KJ (PC1), KK (3PE), KL (CDL), LE (PC1), LF (3PE), LG (3PE), LI (PEK), LJ (SF4), LK (3PE), LL (CUA), ME (PC1), MF (PC1), MG (EHZ), MH (3PE), MI (CDL), MJ (SF4), MK (3PE), ML (PGV), NE (SF4), NF (PC1), NG (MYR), NH (FES), NI (ZN), NJ (PC1), NK (3PE), NL (PGV), OE (PC1), OF (3PE), OG (PC1), OH (PC1), OI (PGV), OJ (3PE), OK (3PE), OL (PGV), PE (PC1), PF (CDL), PG (CDL), PH (CDL), PI (PEK), PJ (3PE), PK (3PE), PL (PGV), QE (FES), QF (3PE), QG (CDL), QH (PC1), QI (PO4), QJ (CDL), QK (PC1), QL (PGV), RE (FMN), RF (GTP), RG (3PE), RH (3PE), RI (PGV), RJ (3PE), RK (CDL), RL (CDL), SE (SF4), SF (MG), SG (3PE), SH (PGV), SI (PGV), SJ (3PE), SK (AME), SL (PGV), TE (SF4), TF (NDP), TH (PGV), TI (PGV), TJ (PC1), TK (CDL), TL (PEK), UE (SF4), UF (3PE), UH (PGV), UI (PGV), UJ (3PE), UK (PC1), UL (CDL), VE (FES), VF (ZN), VG (CDL), VI (3PE), VJ (3PE), VK (3PE), VL (ZN), WE (K), WF (EHZ), WG (3PE), WI (PC1), WJ (PC1), WK (EHZ), WL (PGV), XE (CDL), XF (CDL), XG (3PE), XH (CU), XI (PC1), XJ (3PE), XK (MYR), XL (PEK), YE (PC1), YF (3PE), YH (MG), YI (SF4), YJ (PC1), YK (PC1), YL (PO4), ZE (PC1), ZF (3PE), ZG (3PE), ZH (NA), ZI (PC1), ZJ (3PE), ZK (AYA), ZL (PSC)

Each chain information

Showing 6 chains with heme of 140. Show all chains

Chain FB heme
auth_asym_id	3P
Residue indices (Uniprot)	1-379 (1-379)
Mutations (UniProt numbering)	G314S
Uniprot ID	P24964 ￫UniprotKB
label_asym_ids of heme	IH , HH
Available structure	PDB

Chain GB heme
auth_asym_id	3Q
Residue indices (Uniprot)	2-240 (1-326)
Uniprot ID	A0A287AZF9 ￫UniprotKB
label_asym_ids of heme	LH
Available structure	PDB

Chain PB heme
auth_asym_id	4A
Residue indices (Uniprot)	1-514 (1-514)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	O79876 ￫UniprotKB
label_asym_ids of heme	WH , VH
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.13 Å

Chain VA heme
auth_asym_id	3C
Residue indices (Uniprot)	1-379 (1-379)
Mutations (UniProt numbering)	G314S
Uniprot ID	P24964 ￫UniprotKB
label_asym_ids of heme	UG , TG
Available structure	PDB

Chain WA heme
auth_asym_id	3D
Residue indices (Uniprot)	92-329 (1-326)
Uniprot ID	A0A287AZF9 ￫UniprotKB
label_asym_ids of heme	YG
Available structure	PDB

Chain WD heme
auth_asym_id	8A
Residue indices (Uniprot)	1-514 (1-514)
Missing residues	1MET-1MET
Nonstandard amino acids	FME
Uniprot ID	O79876 ￫UniprotKB
label_asym_ids of heme	EL , DL
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.12 Å