Danish

PDB ID: pdb_00009le8

Coordinates of Cryo-EM structure of the Arabidopsis thaliana C2S2M2-type PSII supercomplex
Experimental method: ELECTRON MICROSCOPY
Resolution: unavailable
Deposition date: 2025-01-07

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	50
label_asym_ids of protein	50 chains (4 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, UA, V, VA, W, WA, X, XA, Y, Z
label_asym_ids of heme	JI KO
label_asym_ids of the others	show AB (CLA), AC (CLA), AD (CLA), AE (NEX), AF (CLA), AG (CLA), AH (BCR), AI (LMG), AJ (BCR), AK (CLA), AL (CLA), AM (FE2), AN (CLA), AO (LHG), AP (LHG), AQ (CLA), AR (CLA), BB (CLA), BC (CLA), BD (CLA), BE (CHL), BF (CLA), BG (PHO), BH (BCR), BI (CLA), BJ (DGD), BK (CHL), BL (CLA), BM (CLA), BN (CLA), BO (LMG), BP (CHL), BQ (CLA), BR (CLA), CB (CHL), CC (CLA), CD (CHL), CE (CHL), CF (CLA), CG (PHO), CH (BCR), CI (SQD), CJ (CLA), CK (CHL), CL (CLA), CM (CLA), CN (BCR), CO (SQD), CP (BCR), CQ (CLA), CR (CLA), DB (CHL), DC (LUT), DD (CHL), DE (CLA), DF (CLA), DG (CLA), DH (LMG), DI (CLA), DJ (SQD), DK (CHL), DL (LUT), DM (CLA), DN (BCR), DO (BCT), DP (DGD), DQ (CHL), DR (CLA), EB (CHL), EC (LUT), ED (CHL), EE (CLA), EF (LUT), EG (BCR), EH (LHG), EI (CLA), EJ (SQD), EK (CLA), EL (LUT), EM (PHO), EN (BCR), EO (CLA), EP (BCR), EQ (CHL), ER (LUT), FB (CHL), FC (LHG), FD (CHL), FE (CLA), FF (LUT), FG (LMG), FH (LHG), FI (PL9), FJ (CHL), FK (CLA), FL (NEX), FM (PHO), FN (LMG), FO (CLA), FP (SQD), FQ (CHL), FR (LUT), GB (CHL), GC (CHL), GD (CLA), GE (CHL), GF (NEX), GG (SQD), GH (LHG), GI (LHG), GJ (CLA), GK (CLA), GL (LHG), GM (CLA), GN (LHG), GO (PL9), GP (SQD), GQ (CLA), GR (NEX), HB (CLA), HC (CHL), HD (CLA), HE (CHL), HF (CHL), HG (DGD), HH (LMG), HI (LMG), HJ (CLA), HK (CLA), HL (CHL), HM (BCR), HN (LHG), HO (LHG), HP (CHL), HQ (CLA), HR (LHG), IB (CLA), IC (CLA), ID (CLA), IE (CHL), IF (CHL), IG (BCT), IH (BCR), II (BCR), IJ (CLA), IK (CLA), IL (CLA), IM (SQD), IN (LMG), IO (LMG), IP (CLA), IQ (CLA), IR (CHL), JB (CLA), JC (CLA), JD (BCR), JE (CLA), JF (CHL), JG (DGD), JH (CLA), JJ (CHL), JK (CHL), JL (CLA), JM (DGD), JN (CLA), JO (BCR), JP (CLA), JQ (CLA), JR (CLA), KB (CLA), KC (CLA), KD (XAT), KE (CLA), KF (CLA), KG (CLA), KH (CLA), KI (CHL), KJ (CHL), KK (LUT), KL (CLA), KM (LMG), KN (CLA), KP (CLA), KQ (CLA), KR (CLA), LB (CLA), LC (CHL), LD (CHL), LE (CLA), LF (CLA), LG (CLA), LH (CLA), LI (CLA), LJ (CHL), LK (NEX), LL (CHL), LM (BCR), LN (CLA), LO (CHL), LP (CHL), LQ (CHL), LR (CLA), MB (LUT), MC (CHL), MD (CLA), ME (CLA), MF (CLA), MG (CLA), MH (CLA), MI (CLA), MJ (CHL), MK (LHG), ML (CHL), MM (CLA), MN (CLA), MO (CLA), MP (CHL), MQ (LUT), MR (CHL), NB (LUT), NC (CHL), ND (CLA), NE (CLA), NF (CHL), NG (CLA), NH (CLA), NI (CLA), NJ (CHL), NK (XAT), NL (CHL), NM (CLA), NN (CLA), NO (CLA), NP (CHL), NQ (NEX), NR (CHL), OB (NEX), OC (CHL), OD (CLA), OE (LUT), OF (CHL), OG (CLA), OH (CLA), OI (CHL), OJ (CLA), OK (CLA), OL (CHL), OM (CLA), ON (CLA), OO (CLA), OP (CHL), OQ (XAT), OR (CHL), PB (XAT), PC (CLA), PD (CHL), PE (LUT), PF (CHL), PG (CLA), PH (CLA), PI (CHL), PJ (CLA), PK (LHG), PL (CLA), PM (CLA), PN (CLA), PO (CHL), PP (CHL), PQ (CLA), PR (CHL), QB (CHL), QC (CLA), QD (CHL), QE (LHG), QF (CHL), QG (CLA), QH (CLA), QI (CHL), QJ (CLA), QK (CHL), QL (CLA), QM (CLA), QN (CLA), QO (CHL), QP (CLA), QQ (LHG), QR (CLA), RB (CLA), RC (CLA), RD (CHL), RE (CHL), RF (CLA), RG (CLA), RH (CLA), RI (CHL), RJ (CLA), RK (CLA), RL (CLA), RM (CLA), RN (CLA), RO (CHL), RP (CLA), RQ (CHL), RR (CLA), SB (CLA), SC (CLA), SD (CHL), SE (CHL), SF (CLA), SG (CLA), SH (CLA), SI (CLA), SJ (LUT), SK (CLA), SL (CLA), SM (CLA), SN (CLA), SO (CHL), SP (CLA), SQ (CLA), SR (CLA), TB (CLA), TC (CLA), TD (CLA), TE (CLA), TF (LUT), TG (CLA), TH (CLA), TI (CLA), TJ (LUT), TK (CLA), TL (CLA), TM (CLA), TN (CLA), TO (CLA), TP (CLA), TQ (CLA), TR (CLA), UB (CHL), UC (LUT), UD (CLA), UE (CLA), UF (BCR), UG (CLA), UH (CLA), UI (CLA), UJ (NEX), UK (CHL), UL (LUT), UM (CLA), UN (CLA), UO (CLA), UP (CLA), UQ (CLA), UR (CLA), VB (CHL), VC (LUT), VD (CLA), VE (CLA), VF (XAT), VG (CLA), VH (BCR), VI (CLA), VJ (LHG), VK (CHL), VL (LUT), VM (CLA), VN (CLA), VO (CLA), VP (LUT), VQ (CHL), VR (LUT), WB (CHL), WC (NEX), WD (CLA), WE (CHL), WF (CLA), WG (CLA), WH (BCR), WI (LUT), WJ (CLA), WK (CHL), WL (LHG), WM (CLA), WN (BCR), WO (CLA), WP (LUT), WQ (CHL), WR (LUT), XB (CHL), XC (CHL), XD (CLA), XE (CHL), XF (OEX), XG (CLA), XH (BCR), XI (LUT), XJ (CLA), XK (CLA), XL (BCR), XM (CLA), XN (BCR), XO (CLA), XP (NEX), XQ (CHL), XR (NEX), YA (CHL), YB (CLA), YC (CHL), YD (LUT), YE (CHL), YF (FE2), YG (CLA), YH (DGD), YI (LHG), YJ (CLA), YK (CLA), YL (DGD), YM (CLA), YN (DGD), YO (LUT), YP (LHG), YQ (CLA), YR (LHG), ZA (CLA), ZB (CLA), ZC (CLA), ZD (LUT), ZE (CLA), ZF (CLA), ZG (CLA), ZH (LHG), ZI (CHL), ZJ (CLA), ZK (CLA), ZL (OEX), ZM (CLA), ZN (DGD), ZO (LUT), ZP (CLA), ZQ (CLA), ZR (BCR)

Each chain information

Showing all 50 chains (4 with heme). Show only chains with heme

Chain A
auth_asym_id	9
Residue indices (Uniprot)	48-249 (1-266)
Uniprot ID	Q39142 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA
auth_asym_id	X
Residue indices (Uniprot)	76-111 (314-355)
Uniprot ID	A0A7G2E9B1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain B
auth_asym_id	0
Residue indices (Uniprot)	43-264 (23-265)
Uniprot ID	Q9S7M0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA
auth_asym_id	AH
Residue indices (Uniprot)	47-259 (36-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain C
auth_asym_id	AA
Residue indices (Uniprot)	48-249 (1-266)
Uniprot ID	Q39142 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	AI
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	P56790 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	AB
Residue indices (Uniprot)	67-258 (45-256)
Uniprot ID	A0A178WK60 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	AJ
Residue indices (Uniprot)	11-336 (2-353)
Missing residues	230ASN-232SER
Structural gaps	Exists
Uniprot ID	P83755 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.09 Å

Chain E
auth_asym_id	AC
Residue indices (Uniprot)	48-249 (1-266)
Uniprot ID	Q39142 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain EA
auth_asym_id	AK
Residue indices (Uniprot)	1-479 (1-508)
Uniprot ID	P56777 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F
auth_asym_id	AD
Residue indices (Uniprot)	43-264 (23-265)
Uniprot ID	Q9S7M0 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain FA
auth_asym_id	AL
Residue indices (Uniprot)	24-472 (15-473)
Missing residues	401LEU-416ALA
Structural gaps	Exists
Uniprot ID	P56778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.09 Å

Chain G
auth_asym_id	AE
Residue indices (Uniprot)	48-249 (1-266)
Uniprot ID	Q39142 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	AM
Residue indices (Uniprot)	12-353 (2-353)
Uniprot ID	P56761 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	AF
Residue indices (Uniprot)	67-258 (45-256)
Uniprot ID	A0A178WK60 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA heme
auth_asym_id	e
Residue indices (Uniprot)	20-83 (1-83)
Uniprot ID	P56779 ￫UniprotKB
label_asym_ids of heme	KO
Available structure	PDB

Chain I
auth_asym_id	J
Residue indices (Uniprot)	11-336 (2-353)
Missing residues	230ASN-232SER
Structural gaps	Exists
Uniprot ID	P83755 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.09 Å

Chain IA heme
auth_asym_id	f
Residue indices (Uniprot)	11-39 (1-39)
Uniprot ID	P62095 ￫UniprotKB
label_asym_ids of heme	KO
Available structure	PDB

Chain J
auth_asym_id	O
Residue indices (Uniprot)	1-479 (1-508)
Uniprot ID	P56777 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	AN
Residue indices (Uniprot)	47-252 (36-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	P
Residue indices (Uniprot)	24-472 (15-473)
Missing residues	401LEU-416ALA
Structural gaps	Exists
Uniprot ID	P56778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB and Modeled
RMSD of experimental residues after energy minimization	0.09 Å

Chain KA
auth_asym_id	AO
Residue indices (Uniprot)	14-73 (2-73)
Uniprot ID	P56780 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	Q
Residue indices (Uniprot)	12-353 (2-353)
Uniprot ID	P56761 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	i
Residue indices (Uniprot)	1-35 (1-36)
Uniprot ID	P62100 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M heme
auth_asym_id	E
Residue indices (Uniprot)	20-83 (1-83)
Uniprot ID	P56779 ￫UniprotKB
label_asym_ids of heme	JI
Available structure	PDB

Chain MA
auth_asym_id	k
Residue indices (Uniprot)	25-61 (25-61)
Uniprot ID	P56782 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N heme
auth_asym_id	F
Residue indices (Uniprot)	11-39 (1-39)
Uniprot ID	P62095 ￫UniprotKB
label_asym_ids of heme	JI
Available structure	PDB

Chain NA
auth_asym_id	AP
Residue indices (Uniprot)	4-38 (1-38)
Uniprot ID	P60129 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	V
Residue indices (Uniprot)	47-252 (36-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain OA
auth_asym_id	m
Residue indices (Uniprot)	1-32 (1-34)
Uniprot ID	P62109 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	j
Residue indices (Uniprot)	14-73 (2-73)
Uniprot ID	P56780 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain PA
auth_asym_id	AQ
Residue indices (Uniprot)	48-249 (36-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	I
Residue indices (Uniprot)	1-35 (1-36)
Uniprot ID	P62100 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain QA
auth_asym_id	AR
Residue indices (Uniprot)	54-288 (41-290)
Structural gaps	Exists
Uniprot ID	Q07473 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	K
Residue indices (Uniprot)	25-61 (25-61)
Uniprot ID	P56782 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain RA
auth_asym_id	AS
Residue indices (Uniprot)	57-272 (49-280)
Uniprot ID	Q9XF89 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	o
Residue indices (Uniprot)	4-38 (1-38)
Uniprot ID	P60129 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain SA
auth_asym_id	AT
Residue indices (Uniprot)	1-29 (1-33)
Uniprot ID	P61839 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	M
Residue indices (Uniprot)	1-32 (1-34)
Uniprot ID	P62109 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain TA
auth_asym_id	u
Residue indices (Uniprot)	79-103 (76-103)
Uniprot ID	Q39195 ￫UniprotKB
S-S bonds	92:101
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	p
Residue indices (Uniprot)	48-249 (36-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain UA
auth_asym_id	w
Residue indices (Uniprot)	80-133 (80-133)
Uniprot ID	Q39194 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	q
Residue indices (Uniprot)	54-288 (41-290)
Structural gaps	Exists
Uniprot ID	Q07473 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain VA
auth_asym_id	x
Residue indices (Uniprot)	76-111 (314-355)
Uniprot ID	A0A7G2E9B1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	v
Residue indices (Uniprot)	57-272 (49-280)
Uniprot ID	Q9XF89 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain WA
auth_asym_id	AU
Residue indices (Uniprot)	47-259 (36-267)
Uniprot ID	P04778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	AG
Residue indices (Uniprot)	1-29 (1-33)
Uniprot ID	P61839 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain XA
auth_asym_id	AV
Residue indices (Uniprot)	1-62 (1-62)
Uniprot ID	P56790 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	U
Residue indices (Uniprot)	79-103 (76-103)
Uniprot ID	Q39195 ￫UniprotKB
S-S bonds	92:101
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	W
Residue indices (Uniprot)	80-133 (80-133)
Uniprot ID	Q39194 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB