Danish

PDB ID: pdb_00009lk5

The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposition date: 2025-01-16

Number of assemblies: 1

Assembly ID: 0 (author_defined_assembly)
Structural data	including_not_modeled
Oligomeric count	46
label_asym_ids of protein	46 chains (4 with heme) A, AA, B, BA, C, CA, D, DA, E, EA, F, FA, G, GA, H, HA, I, IA, J, JA, K, KA, L, LA, M, MA, N, NA, O, OA, P, PA, Q, QA, R, RA, S, SA, T, TA, U, V, W, X, Y, Z
label_asym_ids of heme	HJ LD
label_asym_ids of the others	show AB (BCT), AC (DGD), AD (DMU), AE (LUT), AF (LUT), AG (CHL), AH (FE2), AI (LHG), AJ (CLA), AK (LHG), AL (CLA), AM (CHL), AN (LUT), BB (DGD), BC (SQD), BD (CLA), BE (LUT), BF (NEX), BG (CLA), BH (LMG), BI (CLA), BJ (BCR), BK (XAT), BL (CHL), BM (CHL), BN (LUT), CB (FE2), CC (DGD), CD (PHO), CE (XAT), CF (LHG), CG (CLA), CH (SQD), CI (CLA), CJ (PL9), CK (BCR), CL (CHL), CM (CLA), CN (LHG), DB (CLA), DC (LHG), DD (CLA), DE (NEX), DF (LMG), DG (CLA), DH (CLA), DI (CLA), DJ (LHG), DK (BCR), DL (CHL), DM (CLA), DN (NEX), EB (CLA), EC (LMG), ED (CLA), EE (LHG), EF (CHL), EG (CHL), EH (CLA), EI (CLA), EJ (LHG), EK (SQD), EL (CLA), EM (CLA), EN (CLA), FB (CLA), FC (CLA), FD (BCR), FE (XAT), FF (CLA), FG (CHL), FH (CLA), FI (CLA), FJ (LMG), FK (LHG), FL (CLA), FM (CLA), FN (CLA), GB (CLA), GC (CLA), GD (PL9), GE (BCR), GF (CLA), GG (CHL), GH (CLA), GI (CLA), GJ (DGD), GK (LHG), GL (CLA), GM (CLA), GN (CLA), HB (CLA), HC (CLA), HD (LHG), HE (BCR), HF (CLA), HG (CHL), HH (CLA), HI (CLA), HK (CLA), HL (CLA), HM (LUT), HN (CLA), IB (CLA), IC (CLA), ID (LHG), IE (LHG), IF (CHL), IG (CHL), IH (CLA), II (CLA), IJ (CHL), IK (CLA), IL (CLA), IM (LUT), IN (CHL), JB (CLA), JC (CLA), JD (LMG), JE (LHG), JF (CHL), JG (CLA), JH (CLA), JI (CLA), JJ (CLA), JK (CLA), JL (CLA), JM (NEX), JN (CHL), KB (CLA), KC (CLA), KD (DGD), KE (SQD), KF (CHL), KG (CLA), KH (CLA), KI (CLA), KJ (CLA), KK (CLA), KL (LUT), KM (LHG), KN (CHL), LB (CLA), LC (CLA), LE (CHL), LF (CLA), LG (CLA), LH (CLA), LI (CLA), LJ (CLA), LK (CHL), LL (LUT), LM (XAT), LN (CLA), MB (CLA), MC (CLA), MD (CHL), ME (CLA), MF (CLA), MG (CLA), MH (CLA), MI (CLA), MJ (CHL), MK (CHL), ML (NEX), MM (CHL), MN (CLA), NB (CLA), NC (CLA), ND (CLA), NE (CLA), NF (CLA), NG (CLA), NH (CLA), NI (CLA), NJ (CHL), NK (CHL), NL (LHG), NM (CLA), NN (CLA), OB (CLA), OC (CLA), OD (CLA), OE (CLA), OF (CLA), OG (LUT), OH (CLA), OI (BCR), OJ (CHL), OK (CLA), OL (DMU), OM (CLA), ON (CLA), PB (CLA), PC (CLA), PD (CLA), PE (CHL), PF (CLA), PG (LUT), PH (CLA), PI (DGD), PJ (CHL), PK (CLA), PL (LMG), PM (CLA), PN (CLA), QB (CLA), QC (CLA), QD (CHL), QE (CHL), QF (CLA), QG (NEX), QH (CLA), QI (LHG), QJ (CHL), QK (CLA), QL (VTQ), QM (CHL), QN (LUT), RB (CLA), RC (CLA), RD (CHL), RE (CHL), RF (LUT), RG (LHG), RH (CLA), RI (LHG), RJ (CLA), RK (CLA), RL (LMG), RM (CHL), RN (XAT), SB (CLA), SC (BCR), SD (CHL), SE (CHL), SF (LUT), SG (CLA), SH (CLA), SI (BCR), SJ (CLA), SK (CLA), SL (BCR), SM (CHL), SN (NEX), TB (BCR), TC (BCR), TD (CHL), TE (CHL), TF (NEX), TG (PHO), TH (BCR), TI (DMU), TJ (CLA), TK (LUT), TL (CHL), TM (CHL), TN (LHG), UA (CLA), UB (BCR), UC (DGD), UD (CHL), UE (CLA), UF (LHG), UG (PHO), UH (BCR), UI (SQD), UJ (CLA), UK (XAT), UL (CLA), UM (CHL), VA (CLA), VB (BCR), VC (LHG), VD (CLA), VE (CLA), VF (DMU), VG (CLA), VH (BCR), VI (LMG), VJ (CLA), VK (NEX), VL (CLA), VM (CLA), WA (PHO), WB (LMG), WC (BCR), WD (CLA), WE (CLA), WF (LHG), WG (BCR), WH (LMG), WI (DMU), WJ (LUT), WK (LHG), WL (CLA), WM (CLA), XA (CLA), XB (LHG), XC (DMU), XD (CLA), XE (CLA), XF (VTQ), XG (SQD), XH (LHG), XI (CLA), XJ (LUT), XK (CHL), XL (CHL), XM (CLA), YA (BCR), YB (LHG), YC (SQD), YD (CLA), YE (CLA), YF (LMG), YG (LMG), YH (LHG), YI (CLA), YJ (XAT), YK (CLA), YL (CHL), YM (CLA), ZA (SQD), ZB (LMG), ZC (LMG), ZD (CLA), ZE (LUT), ZF (XAT), ZG (BCT), ZH (DGD), ZI (CLA), ZJ (NEX), ZK (CLA), ZL (CHL), ZM (CLA)

Each chain information

Showing all 46 chains (4 with heme). Show only chains with heme

Chain A
auth_asym_id	A
Residue indices (Uniprot)	9-343 (1-353)
Uniprot ID	P83755 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain AA heme
auth_asym_id	e
Residue indices (Uniprot)	11-81 (1-83)
Uniprot ID	P56779 ￫UniprotKB
label_asym_ids of heme	HJ
Available structure	PDB

Chain B
auth_asym_id	B
Residue indices (Uniprot)	2-490 (1-508)
Uniprot ID	P56777 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain BA heme
auth_asym_id	f
Residue indices (Uniprot)	10-39 (1-39)
Uniprot ID	P62095 ￫UniprotKB
label_asym_ids of heme	HJ
Available structure	PDB

Chain C
auth_asym_id	C
Residue indices (Uniprot)	25-473 (1-473)
Uniprot ID	P56778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain CA
auth_asym_id	g
Residue indices (Uniprot)	48-266 (1-267)
Uniprot ID	P0CJ48 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain D
auth_asym_id	D
Residue indices (Uniprot)	14-352 (1-353)
Uniprot ID	P56761 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain DA
auth_asym_id	h
Residue indices (Uniprot)	14-72 (1-73)
Uniprot ID	P56780 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain E heme
auth_asym_id	E
Residue indices (Uniprot)	11-81 (1-83)
Uniprot ID	P56779 ￫UniprotKB
label_asym_ids of heme	LD
Available structure	PDB

Chain EA
auth_asym_id	i
Residue indices (Uniprot)	1-34 (1-36)
Uniprot ID	P62100 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain F heme
auth_asym_id	F
Residue indices (Uniprot)	10-39 (1-39)
Uniprot ID	P62095 ￫UniprotKB
label_asym_ids of heme	LD
Available structure	PDB

Chain FA
auth_asym_id	j
Residue indices (Uniprot)	6-34 (1-40)
Uniprot ID	P56781 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain G
auth_asym_id	G
Residue indices (Uniprot)	48-266 (1-267)
Uniprot ID	P0CJ48 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain GA
auth_asym_id	k
Residue indices (Uniprot)	25-61 (1-61)
Uniprot ID	P56782 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain H
auth_asym_id	H
Residue indices (Uniprot)	14-72 (1-73)
Uniprot ID	P56780 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain HA
auth_asym_id	l
Residue indices (Uniprot)	2-38 (1-38)
Uniprot ID	P60129 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain I
auth_asym_id	I
Residue indices (Uniprot)	1-34 (1-36)
Uniprot ID	P62100 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain IA
auth_asym_id	m
Residue indices (Uniprot)	2-33 (1-34)
Uniprot ID	P62109 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain J
auth_asym_id	J
Residue indices (Uniprot)	6-34 (1-40)
Uniprot ID	P56781 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain JA
auth_asym_id	o
Residue indices (Uniprot)	90-331 (1-332)
Structural gaps	Exists
Uniprot ID	P23321 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain K
auth_asym_id	K
Residue indices (Uniprot)	25-61 (1-61)
Uniprot ID	P56782 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain KA
auth_asym_id	r
Residue indices (Uniprot)	57-276 (1-276)
Uniprot ID	Q9S7W1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain L
auth_asym_id	L
Residue indices (Uniprot)	2-38 (1-38)
Uniprot ID	P60129 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain LA
auth_asym_id	s
Residue indices (Uniprot)	52-272 (1-280)
Uniprot ID	Q9XF89 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain M
auth_asym_id	M
Residue indices (Uniprot)	2-33 (1-34)
Uniprot ID	P62109 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain MA
auth_asym_id	t
Residue indices (Uniprot)	1-29 (1-33)
Uniprot ID	P61839 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain N
auth_asym_id	N
Residue indices (Uniprot)	48-266 (1-267)
Uniprot ID	P0CJ48 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain NA
auth_asym_id	u
Residue indices (Uniprot)	81-103 (1-103)
Uniprot ID	Q39195 ￫UniprotKB
S-S bonds	92:101
label_asym_ids of heme	None
Available structure	PDB

Chain O
auth_asym_id	O
Residue indices (Uniprot)	90-331 (1-332)
Structural gaps	Exists
Uniprot ID	P23321 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain OA
auth_asym_id	w
Residue indices (Uniprot)	80-133 (1-133)
Uniprot ID	Q39194 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain P
auth_asym_id	S
Residue indices (Uniprot)	52-272 (1-280)
Uniprot ID	Q9XF89 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain PA
auth_asym_id	x
Residue indices (Uniprot)	316-353 (240-355)
Uniprot ID	A0A7G2E9B1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Q
auth_asym_id	T
Residue indices (Uniprot)	1-29 (1-33)
Uniprot ID	P61839 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain QA
auth_asym_id	z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	P56790 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain R
auth_asym_id	U
Residue indices (Uniprot)	81-103 (1-103)
Uniprot ID	Q39195 ￫UniprotKB
S-S bonds	92:101
label_asym_ids of heme	None
Available structure	PDB

Chain RA
auth_asym_id	n
Residue indices (Uniprot)	48-266 (1-267)
Uniprot ID	P0CJ48 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain S
auth_asym_id	W
Residue indices (Uniprot)	80-133 (1-133)
Uniprot ID	Q39194 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain SA
auth_asym_id	y
Residue indices (Uniprot)	46-265 (1-265)
Uniprot ID	Q9S7J7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain T
auth_asym_id	X
Residue indices (Uniprot)	316-353 (240-355)
Uniprot ID	A0A7G2E9B1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain TA
auth_asym_id	R
Residue indices (Uniprot)	57-276 (1-276)
Uniprot ID	Q9S7W1 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain U
auth_asym_id	Y
Residue indices (Uniprot)	46-265 (1-265)
Uniprot ID	Q9S7J7 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain V
auth_asym_id	Z
Residue indices (Uniprot)	1-61 (1-62)
Uniprot ID	P56790 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain W
auth_asym_id	a
Residue indices (Uniprot)	9-343 (1-353)
Uniprot ID	P83755 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain X
auth_asym_id	b
Residue indices (Uniprot)	2-490 (1-508)
Uniprot ID	P56777 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Y
auth_asym_id	c
Residue indices (Uniprot)	25-473 (1-473)
Uniprot ID	P56778 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB

Chain Z
auth_asym_id	d
Residue indices (Uniprot)	14-352 (1-353)
Uniprot ID	P56761 ￫UniprotKB
label_asym_ids of heme	None
Available structure	PDB